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3hd4

From Proteopedia

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{{Seed}}
 
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[[Image:3hd4.jpg|left|200px]]
 
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<!--
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==MHV Nucleocapsid Protein NTD==
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The line below this paragraph, containing "STRUCTURE_3hd4", creates the "Structure Box" on the page.
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<StructureSection load='3hd4' size='340' side='right'caption='[[3hd4]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3hd4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Murine_hepatitis_virus_strain_A59 Murine hepatitis virus strain A59]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HD4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HD4 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.747&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hd4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hd4 OCA], [https://pdbe.org/3hd4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hd4 RCSB], [https://www.ebi.ac.uk/pdbsum/3hd4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hd4 ProSAT]</span></td></tr>
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{{STRUCTURE_3hd4| PDB=3hd4 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NCAP_CVMA5 NCAP_CVMA5] Major structural component of virions that associates with genomic RNA to form a long, flexible, helical nucleocapsid. Interaction with the M protein leads to the formation of virus particles. Binds to cellular membranes and phospholipids. Elicits cell-mediated immunity. May play roles in viral transcription and translation, and/or replication. Induces transcription of the prothrombinase (FGL2) and elevates procoagulant activity.<ref>PMID:12594208</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hd/3hd4_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hd4 ConSurf].
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<div style="clear:both"></div>
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===MHV Nucleocapsid Protein NTD===
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==See Also==
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*[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]]
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== References ==
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<references/>
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The line below this paragraph, {{ABSTRACT_PUBMED_19782089}}, adds the Publication Abstract to the page
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 19782089 is the PubMed ID number.
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</StructureSection>
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[[Category: Large Structures]]
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{{ABSTRACT_PUBMED_19782089}}
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[[Category: Murine hepatitis virus strain A59]]
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[[Category: Dann III CE]]
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==About this Structure==
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[[Category: Giedroc DP]]
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3HD4 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Murine_hepatitis_virus_strain_a59 Murine hepatitis virus strain a59]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HD4 OCA].
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[[Category: Keane SC]]
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==Reference==
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<ref group="xtra">PMID:19782089</ref><references group="xtra"/>
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[[Category: Murine hepatitis virus strain a59]]
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[[Category: Giedroc, D P.]]
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[[Category: III, C E.Dann.]]
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[[Category: Keane, S C.]]
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[[Category: Beta platform beta hairpin]]
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[[Category: Cytoplasm]]
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[[Category: Golgi apparatus]]
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[[Category: Nucleus]]
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[[Category: Phosphoprotein]]
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[[Category: Ribonucleoprotein]]
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[[Category: Rna-binding]]
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[[Category: Transcription]]
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[[Category: Transcription regulation]]
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[[Category: Viral nucleoprotein]]
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[[Category: Viral protein]]
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[[Category: Virion]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 18 19:32:11 2009''
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Current revision

MHV Nucleocapsid Protein NTD

PDB ID 3hd4

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