This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3hm7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3hm7" [edit=sysop:move=sysop])
Current revision (10:00, 21 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_3hm7| PDB=3hm7 | SCENE= }}
 
-
===Crystal structure of allantoinase from Bacillus halodurans C-125===
 
-
==About this Structure==
+
==Crystal structure of allantoinase from Bacillus halodurans C-125==
-
[[3hm7]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_halodurans Bacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HM7 OCA].
+
<StructureSection load='3hm7' size='340' side='right'caption='[[3hm7]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
[[Category: Allantoinase]]
+
== Structural highlights ==
-
[[Category: Bacillus halodurans]]
+
<table><tr><td colspan='2'>[[3hm7]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans Alkalihalobacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HM7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HM7 FirstGlance]. <br>
-
[[Category: Almo, S C.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
[[Category: Burley, S K.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[Category: Miller, S.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hm7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hm7 OCA], [https://pdbe.org/3hm7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hm7 RCSB], [https://www.ebi.ac.uk/pdbsum/3hm7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hm7 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3hm7 TOPSAN]</span></td></tr>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</table>
-
[[Category: Nysgxrc, New York Structural Genomix Research Consortium.]]
+
== Function ==
-
[[Category: Patskovsky, Y.]]
+
[https://www.uniprot.org/uniprot/ALLB_HALH5 ALLB_HALH5] Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.[HAMAP-Rule:MF_01645]
-
[[Category: Raushel, F M.]]
+
== Evolutionary Conservation ==
-
[[Category: Romero, R.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Rutter, M.]]
+
Check<jmol>
-
[[Category: Sauder, J M.]]
+
<jmolCheckbox>
-
[[Category: Wasserman, S R.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hm/3hm7_consurf.spt"</scriptWhenChecked>
-
[[Category: Allantoinase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Dna-binding]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Hydrolase]]
+
</jmolCheckbox>
-
[[Category: Metal-binding]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hm7 ConSurf].
-
[[Category: Metallo-dependent hydrolase]]
+
<div style="clear:both"></div>
-
[[Category: New york sgx research center for structural genomic]]
+
__TOC__
-
[[Category: New york structural genomix research consortium]]
+
</StructureSection>
-
[[Category: Nysgxrc]]
+
[[Category: Alkalihalobacillus halodurans]]
-
[[Category: Protein structure initiative]]
+
[[Category: Large Structures]]
-
[[Category: Psi-2]]
+
[[Category: Almo SC]]
-
[[Category: Purine metabolism]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Miller S]]
 +
[[Category: Patskovsky Y]]
 +
[[Category: Raushel FM]]
 +
[[Category: Romero R]]
 +
[[Category: Rutter M]]
 +
[[Category: Sauder JM]]
 +
[[Category: Wasserman SR]]

Current revision

Crystal structure of allantoinase from Bacillus halodurans C-125

PDB ID 3hm7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3hm7"
Personal tools