This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3i0u
From Proteopedia
(Difference between revisions)
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Structure of the type III effector/phosphothreonine lyase OspF from Shigella flexneri== | ==Structure of the type III effector/phosphothreonine lyase OspF from Shigella flexneri== | ||
| - | <StructureSection load='3i0u' size='340' side='right' caption='[[3i0u]], [[Resolution|resolution]] 2.70Å' scene=''> | + | <StructureSection load='3i0u' size='340' side='right'caption='[[3i0u]], [[Resolution|resolution]] 2.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3i0u]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3i0u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I0U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I0U FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr> | |
| - | <tr id=' | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i0u OCA], [https://pdbe.org/3i0u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i0u RCSB], [https://www.ebi.ac.uk/pdbsum/3i0u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i0u ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/OSPF_SHIFL OSPF_SHIFL] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i0/3i0u_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i0/3i0u_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i0u ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Shigella flexneri]] | [[Category: Shigella flexneri]] | ||
| - | [[Category: Anderson | + | [[Category: Anderson WF]] |
| - | [[Category: Chirgadze | + | [[Category: Chirgadze NY]] |
| - | [[Category: Edwards | + | [[Category: Edwards AM]] |
| - | [[Category: Gordon | + | [[Category: Gordon R]] |
| - | [[Category: Joachimiak | + | [[Category: Joachimiak A]] |
| - | [[Category: Kagan | + | [[Category: Kagan O]] |
| - | [[Category: Lam | + | [[Category: Lam R]] |
| - | [[Category: Nocek | + | [[Category: Nocek B]] |
| - | [[Category: Savchenko | + | [[Category: Savchenko A]] |
| - | [[Category: Singer | + | [[Category: Singer AU]] |
| - | [[Category: Skarina | + | [[Category: Skarina T]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Structure of the type III effector/phosphothreonine lyase OspF from Shigella flexneri
| |||||||||||
Categories: Large Structures | Shigella flexneri | Anderson WF | Chirgadze NY | Edwards AM | Gordon R | Joachimiak A | Kagan O | Lam R | Nocek B | Savchenko A | Singer AU | Skarina T

