This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3ioy
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3ioy| PDB=3ioy | SCENE= }} | ||
| - | ===Structure of putative short-chain dehydrogenase (Saro_0793) from Novosphingobium aromaticivorans=== | ||
| - | == | + | ==Structure of putative short-chain dehydrogenase (Saro_0793) from Novosphingobium aromaticivorans== |
| - | [[3ioy]] is a 2 chain structure with sequence from [ | + | <StructureSection load='3ioy' size='340' side='right'caption='[[3ioy]], [[Resolution|resolution]] 1.90Å' scene=''> |
| - | [ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[3ioy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans_DSM_12444 Novosphingobium aromaticivorans DSM 12444]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IOY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IOY FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ioy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ioy OCA], [https://pdbe.org/3ioy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ioy RCSB], [https://www.ebi.ac.uk/pdbsum/3ioy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ioy ProSAT]</span></td></tr> |
| - | [ | + | </table> |
| - | [[ | + | == Function == |
| - | [ | + | [https://www.uniprot.org/uniprot/Q2GA85_NOVAD Q2GA85_NOVAD] |
| - | [[ | + | == Evolutionary Conservation == |
| - | [[Category: | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/io/3ioy_consurf.spt"</scriptWhenChecked> |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ioy ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Novosphingobium aromaticivorans DSM 12444]] | ||
| + | [[Category: Almo SC]] | ||
| + | [[Category: Burley SK]] | ||
| + | [[Category: Morano C]] | ||
| + | [[Category: Ramagopal UA]] | ||
Current revision
Structure of putative short-chain dehydrogenase (Saro_0793) from Novosphingobium aromaticivorans
| |||||||||||
