This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3jup

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:13, 21 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3jup.png|left|200px]]
 
-
<!--
+
==Crystal Structure of PhzA/B from Burkholderia cepacia R18194 in complex with (S)-5-bromo-2-(piperidin-3-ylamino)benzoic acid==
-
The line below this paragraph, containing "STRUCTURE_3jup", creates the "Structure Box" on the page.
+
<StructureSection load='3jup' size='340' side='right'caption='[[3jup]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3jup]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_lata Burkholderia lata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JUP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JUP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKD:5-BROMO-2-[(3S)-PIPERIDIN-3-YLAMINO]BENZOATE'>AKD</scene></td></tr>
-
{{STRUCTURE_3jup| PDB=3jup | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jup FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jup OCA], [https://pdbe.org/3jup PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jup RCSB], [https://www.ebi.ac.uk/pdbsum/3jup PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jup ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of PhzA/B from Burkholderia cepacia R18194 in complex with (S)-5-bromo-2-(piperidin-3-ylamino)benzoic acid===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q396C9_BURL3 Q396C9_BURL3]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[3jup]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_sp._383 Burkholderia sp. 383]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JUP OCA].
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Reference==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ju/3jup_consurf.spt"</scriptWhenChecked>
-
<ref group="xtra">PMID:19876985</ref><ref group="xtra">PMID:19053436</ref><references group="xtra"/>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Burkholderia sp. 383]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Blankenfeldt, W.]]
+
</jmolCheckbox>
-
[[Category: Breinbauer, R.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jup ConSurf].
-
[[Category: Jain, I H.]]
+
<div style="clear:both"></div>
-
[[Category: Mentel, M.]]
+
__TOC__
-
[[Category: Biosynthetic protein]]
+
</StructureSection>
-
[[Category: Chirality]]
+
[[Category: Burkholderia lata]]
-
[[Category: Drug design]]
+
[[Category: Large Structures]]
-
[[Category: Inhibitor]]
+
[[Category: Blankenfeldt W]]
-
[[Category: Medicinal chemistry]]
+
[[Category: Breinbauer R]]
-
[[Category: Phenazine biosynthesis]]
+
[[Category: Jain IH]]
 +
[[Category: Mentel M]]

Current revision

Crystal Structure of PhzA/B from Burkholderia cepacia R18194 in complex with (S)-5-bromo-2-(piperidin-3-ylamino)benzoic acid

PDB ID 3jup

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools