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3k3r
From Proteopedia
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| - | {{STRUCTURE_3k3r| PDB=3k3r | SCENE= }} | ||
| - | ===Unrefined crystal structure of a LexA-DNA complex=== | ||
| - | {{ABSTRACT_PUBMED_20703307}} | ||
| - | == | + | ==Unrefined crystal structure of a LexA-DNA complex== |
| - | [[http://www.uniprot.org/uniprot/LEXA_ECOLI LEXA_ECOLI | + | <StructureSection load='3k3r' size='340' side='right'caption='[[3k3r]], [[Resolution|resolution]] 3.20Å' scene=''> |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[3k3r]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K3R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K3R FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2Å</td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k3r OCA], [https://pdbe.org/3k3r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k3r RCSB], [https://www.ebi.ac.uk/pdbsum/3k3r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k3r ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | < | + | == Function == |
| - | [[Category: Escherichia coli | + | [https://www.uniprot.org/uniprot/LEXA_ECOLI LEXA_ECOLI] Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. Binds to the 16 bp palindromic sequence 5'-CTGTATATATATACAG-3'. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.<ref>PMID:7027255</ref> <ref>PMID:7027256</ref> |
| - | [[Category: | + | == Evolutionary Conservation == |
| - | [[Category: Pigli | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Rice | + | Check<jmol> |
| - | [[Category: Zhang | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k3/3k3r_consurf.spt"</scriptWhenChecked> | |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | + | </jmolCheckbox> | |
| - | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3k3r ConSurf]. | |
| - | + | <div style="clear:both"></div> | |
| - | + | == References == | |
| - | + | <references/> | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Escherichia coli K-12]] | |
| - | + | [[Category: Large Structures]] | |
| - | + | [[Category: Pigli YZ]] | |
| - | + | [[Category: Rice PA]] | |
| - | + | [[Category: Zhang APP]] | |
| - | + | ||
Current revision
Unrefined crystal structure of a LexA-DNA complex
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