This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3mkw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:25, 21 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3mkw.jpg|left|200px]]
 
-
<!--
+
==Structure of sopB(155-272)-18mer complex, I23 form==
-
The line below this paragraph, containing "STRUCTURE_3mkw", creates the "Structure Box" on the page.
+
<StructureSection load='3mkw' size='340' side='right'caption='[[3mkw]], [[Resolution|resolution]] 2.99&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3mkw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MKW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MKW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.99&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3mkw| PDB=3mkw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mkw OCA], [https://pdbe.org/3mkw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mkw RCSB], [https://www.ebi.ac.uk/pdbsum/3mkw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mkw ProSAT]</span></td></tr>
-
 
+
</table>
-
===Structure of sopB(155-272)-18mer complex, I23 form===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/SOPB_ECOLI SOPB_ECOLI] Control of plasmid partitioning; required to recognize the cis-acting. Binds specifically with the DNA segment containing the sopC region. SopB is trans-acting.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_20236989}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 20236989 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mk/3mkw_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_20236989}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
3MKW is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MKW OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mkw ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:20236989</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Escherichia coli]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Piro, K.]]
+
[[Category: Large Structures]]
-
[[Category: Schumacher, M A.]]
+
[[Category: Piro K]]
-
[[Category: Xu, W.]]
+
[[Category: Schumacher MA]]
-
[[Category: Centromere]]
+
[[Category: Xu W]]
-
[[Category: Dna binding protein-dna complex]]
+
-
[[Category: F plasmid]]
+
-
[[Category: Segregation]]
+
-
[[Category: Sopb]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 5 11:58:41 2010''
+

Current revision

Structure of sopB(155-272)-18mer complex, I23 form

PDB ID 3mkw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools