This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3pgw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:40, 21 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3pgw.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of human U1 snRNP==
-
The line below this paragraph, containing "STRUCTURE_3pgw", creates the "Structure Box" on the page.
+
<StructureSection load='3pgw' size='340' side='right'caption='[[3pgw]], [[Resolution|resolution]] 4.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3pgw]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PGW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4.4&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pgw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pgw OCA], [https://pdbe.org/3pgw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pgw RCSB], [https://www.ebi.ac.uk/pdbsum/3pgw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pgw ProSAT]</span></td></tr>
-
{{STRUCTURE_3pgw| PDB=3pgw | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SNRPA_HUMAN SNRPA_HUMAN] Binds stem loop II of U1 snRNA. It is the first snRNP to interact with pre-mRNA. This interaction is required for the subsequent binding of U2 snRNP and the U4/U6/U5 tri-snRNP. In a snRNP-free form (SF-A) may be involved in coupled pre-mRNA splicing and polyadenylation process. Binds preferentially to the 5'-UGCAC-3' motif in vitro.<ref>PMID:9848648</ref>
-
===Crystal structure of human U1 snRNP===
+
==See Also==
-
 
+
*[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]]
-
 
+
*[[Sm-like protein 3D structures|Sm-like protein 3D structures]]
-
<!--
+
== References ==
-
The line below this paragraph, {{ABSTRACT_PUBMED_21113136}}, adds the Publication Abstract to the page
+
<references/>
-
(as it appears on PubMed at http://www.pubmed.gov), where 21113136 is the PubMed ID number.
+
__TOC__
-
-->
+
</StructureSection>
-
{{ABSTRACT_PUBMED_21113136}}
+
-
 
+
-
==About this Structure==
+
-
[[3pgw]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PGW OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:21113136</ref><references group="xtra"/>
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Kastner, B.]]
+
[[Category: Large Structures]]
-
[[Category: Luehrmann, R.]]
+
[[Category: Kastner B]]
-
[[Category: Trowitzsch, S.]]
+
[[Category: Luehrmann R]]
-
[[Category: Wahl, M C.]]
+
[[Category: Trowitzsch S]]
-
[[Category: Weber, G.]]
+
[[Category: Wahl MC]]
-
[[Category: Mrna]]
+
[[Category: Weber G]]
-
[[Category: Protein-rna complex]]
+
-
[[Category: Rrm]]
+
-
[[Category: Sm core]]
+
-
[[Category: Sm fold]]
+
-
[[Category: Snrnp]]
+
-
[[Category: Splicing]]
+
-
[[Category: Splicing factor]]
+
-
[[Category: Splicing-dna-rna complex]]
+
-
[[Category: U1 snrna]]
+

Current revision

Crystal structure of human U1 snRNP

PDB ID 3pgw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools