This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3qap
From Proteopedia
(Difference between revisions)
| (8 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of Natronomonas pharaonis sensory rhodopsin II in the ground state== | |
| + | <StructureSection load='3qap' size='340' side='right'caption='[[3qap]], [[Resolution|resolution]] 1.90Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[3qap]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Natronomonas_pharaonis Natronomonas pharaonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QAP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QAP FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=L2P:2,3-DI-PHYTANYL-GLYCEROL'>L2P</scene>, <scene name='pdbligand=LFA:EICOSANE'>LFA</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qap OCA], [https://pdbe.org/3qap PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qap RCSB], [https://www.ebi.ac.uk/pdbsum/3qap PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qap ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/BACS2_NATPH BACS2_NATPH] Involved in the control of phototaxis. Seems to activate a methyl-accepting protein (HTR-II). Photoreceptor for blue light. | ||
| - | + | ==See Also== | |
| - | + | *[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]] | |
| - | + | *[[Rhodopsin 3D structures|Rhodopsin 3D structures]] | |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Natronomonas pharaonis]] | ||
| + | [[Category: Borshchevskiy V]] | ||
| + | [[Category: Buldt G]] | ||
| + | [[Category: Engelhard M]] | ||
| + | [[Category: Gordeliy V]] | ||
| + | [[Category: Grudinin S]] | ||
| + | [[Category: Gushchin I]] | ||
| + | [[Category: Ishchenko A]] | ||
| + | [[Category: Reshetnyak A]] | ||
| + | [[Category: Round E]] | ||
Current revision
Crystal structure of Natronomonas pharaonis sensory rhodopsin II in the ground state
| |||||||||||
