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3sdh

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[[Image:3sdh.jpg|left|200px]]<br /><applet load="3sdh" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="3sdh, resolution 1.4&Aring;" />
 
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'''HIGH RESOLUTION CRYSTALLOGRAPHIC ANALYSIS OF A COOPERATIVE DIMERIC HEMOGLOBIN'''<br />
 
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==Overview==
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==HIGH RESOLUTION CRYSTALLOGRAPHIC ANALYSIS OF A COOPERATIVE DIMERIC HEMOGLOBIN==
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High-resolution crystal structures of the co-operative dimeric hemoglobin, from the blood clam Scapharca inaequivalvis have been determined in the, unliganded (deoxy) and carbon monoxide (CO) liganded states. The deoxy, structure has been refined at 1.6 A resolution to an R-factor of 0.158 and, the CO structure has been refined at 1.4 A resolution to an R-factor of, 0.159. These structures reveal details of the structural transitions, involved in co-operative ligand binding that involve only a minor rotation, of subunits but very striking tertiary changes at the interface. A small, number of residues in the F-helix appear to mediate co-operativity in this, simple hemoglobin. The oxygen affinity of each subunit appears to be, largely dictated by the disposition of phenylalanine 97, whose side-chain, packs in the heme pocket in the deoxy state but is extruded towards the, interface in the CO-liganded structure. Direct involvement of the, ligand-binding heme group is a novel feature of the subunit interface and, appears important for intersubunit communication. Ligation alters the, conformation of the heme propionate groups along with two interacting, residues from the symmetry-related subunit. These two residues, lysine 96, and asparagine 100, link the heme of one subunit with the F-helix of the, second subunit in such a way as to influence the ligand affinity of that, subunit. The interface is highly hydrated by well-ordered water molecules, that are likely to be important in the stabilization of the two, structures.
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<StructureSection load='3sdh' size='340' side='right'caption='[[3sdh]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3sdh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anadara_inaequivalvis Anadara inaequivalvis]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1sdh 1sdh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SDH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SDH FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3sdh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3sdh OCA], [https://pdbe.org/3sdh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3sdh RCSB], [https://www.ebi.ac.uk/pdbsum/3sdh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3sdh ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GLB1_ANAIN GLB1_ANAIN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sd/3sdh_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3sdh ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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3SDH is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Scapharca_inaequivalvis Scapharca inaequivalvis] with <scene name='pdbligand=HEM:'>HEM</scene> and <scene name='pdbligand=CMO:'>CMO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. This structure superseeds the now removed PDB entry 1SDH. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SDH OCA].
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*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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High-resolution crystallographic analysis of a co-operative dimeric hemoglobin., Royer WE Jr, J Mol Biol. 1994 Jan 14;235(2):657-81. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8289287 8289287]
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[[Category: Anadara inaequivalvis]]
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[[Category: Scapharca inaequivalvis]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Royerjunior WE]]
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[[Category: Royerjunior, W.E.]]
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[[Category: CMO]]
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[[Category: HEM]]
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[[Category: oxygen transport]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 17:44:13 2008''
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Current revision

HIGH RESOLUTION CRYSTALLOGRAPHIC ANALYSIS OF A COOPERATIVE DIMERIC HEMOGLOBIN

PDB ID 3sdh

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