This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3vc1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:35, 1 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3vc1.png|left|200px]]
 
-
<!--
+
==Crystal structure of geranyl diphosphate C-methyltransferase from Streptomyces coelicolor A3(2) in complex with Mg2+, geranyl-S-thiolodiphosphate, and S-adenosyl-L-homocysteine==
-
The line below this paragraph, containing "STRUCTURE_3vc1", creates the "Structure Box" on the page.
+
<StructureSection load='3vc1' size='340' side='right'caption='[[3vc1]], [[Resolution|resolution]] 1.82&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3vc1]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor_A3(2) Streptomyces coelicolor A3(2)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VC1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VC1 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.82&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GST:GERANYL+S-THIOLODIPHOSPHATE'>GST</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3vc1| PDB=3vc1 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vc1 OCA], [https://pdbe.org/3vc1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vc1 RCSB], [https://www.ebi.ac.uk/pdbsum/3vc1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vc1 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of geranyl diphosphate C-methyltransferase from Streptomyces coelicolor A3(2) in complex with Mg2+, geranyl-S-thiolodiphosphate, and S-adenosyl-L-homocysteine===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/GPPMT_STRCO GPPMT_STRCO] Catalyzes the SAM-dependent methylation of geranyl diphosphate (GPP) to yield (E)-2-methylgeranyl diphosphate (2-MeGPP).<ref>PMID:18563898</ref>
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_22455498}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 22455498 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Large Structures]]
-
{{ABSTRACT_PUBMED_22455498}}
+
[[Category: Christianson DW]]
-
 
+
[[Category: Koksal M]]
-
==About this Structure==
+
-
[[3vc1]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VC1 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:022455498</ref><references group="xtra"/>
+
-
[[Category: Streptomyces coelicolor]]
+
-
[[Category: Christianson, D W.]]
+
-
[[Category: Koksal, M.]]
+
-
[[Category: 2-methylisoborneol biosynthesis]]
+
-
[[Category: C-methyltransferase]]
+
-
[[Category: Methyltransferase fold]]
+
-
[[Category: Rossmann fold]]
+
-
[[Category: Sam-dependent methyltransferase]]
+
-
[[Category: Terpenoid biosynthesis]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of geranyl diphosphate C-methyltransferase from Streptomyces coelicolor A3(2) in complex with Mg2+, geranyl-S-thiolodiphosphate, and S-adenosyl-L-homocysteine

PDB ID 3vc1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools