This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4hdj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:38, 1 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of BamB from Pseudomonas aeruginosa==
==Crystal Structure of BamB from Pseudomonas aeruginosa==
-
<StructureSection load='4hdj' size='340' side='right' caption='[[4hdj]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
+
<StructureSection load='4hdj' size='340' side='right'caption='[[4hdj]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4hdj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_pao1 Pseudomonas aeruginosa pao1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HDJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HDJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4hdj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4HDJ FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bamB, PA3800 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208964 Pseudomonas aeruginosa PAO1])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hdj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4hdj RCSB], [http://www.ebi.ac.uk/pdbsum/4hdj PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4hdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hdj OCA], [https://pdbe.org/4hdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4hdj RCSB], [https://www.ebi.ac.uk/pdbsum/4hdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4hdj ProSAT]</span></td></tr>
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/BAMB_PSEAE BAMB_PSEAE] Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (By similarity).
-
The assembly of beta-barrel Outer Membrane Proteins (OMPs) in the outer membrane is essential for gram-negative bacteria. The process requires the beta-Barrel Assembly Machine (BAM), a multiprotein complex that, in E. coli, is composed of the OMP BamA and four lipoproteins BamB-E. Whereas BamA and BamD are essential, deletion of BamB, C or E produce membrane permeability defects. Here we present the high-resolution structure of BamB from Pseudomonas aeruginosa. This protein can complement the deletion of bamB in E. coli indicating that they are functionally equivalent. Conserved structural features include an eight-bladed beta-propeller fold stabilized by tryptophan docking motifs with a central pore about 8 A in diameter at the narrowest point. This pore distinguishes BamB from related beta-propellers, such as quinoprotein dehydrogenases. However, a double mutation designed to block this pore was fully functional indicating that the opening is not essential. Two loops protruding from the bottom of the propeller are conserved and mediate binding to BamA. Conversely, an additional loop only present in E. coli BamB is not required for function. A cluster of highly conserved residues in a groove between blades 6 and 7 is crucial for proper BamB folding or biogenesis. It has been proposed that BamB may bind nascent OMPs by beta-augmentation to its propeller outer strands, or recognize the aromatic residue signature at the C-terminus of OMPs. However, Isothermal Titration Calorimetry experiments and structural analysis do not support these proposals. The structural and mutagenesis analysis suggests that the main function of BamB is to bind and modulate BamA, rather than directly interact with nascent OMPs.
+
-
 
+
-
Crystal structure of BamB from Pseudomonas aeruginosa and functional evaluation of its conserved structural features.,Jansen KB, Baker SL, Sousa MC PLoS One. 2012;7(11):e49749. doi: 10.1371/journal.pone.0049749. Epub 2012 Nov 26. PMID:23189157<ref>PMID:23189157</ref>
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
==See Also==
-
</div>
+
*[[Bam complex 3D structures|Bam complex 3D structures]]
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pseudomonas aeruginosa pao1]]
+
[[Category: Large Structures]]
-
[[Category: Baker, S L]]
+
[[Category: Pseudomonas aeruginosa PAO1]]
-
[[Category: Jansen, K B]]
+
[[Category: Baker SL]]
-
[[Category: Sousa, M C]]
+
[[Category: Jansen KB]]
-
[[Category: Beta-barrel assembly]]
+
[[Category: Sousa MC]]
-
[[Category: Beta-propeller]]
+
-
[[Category: Protein binding]]
+

Current revision

Crystal Structure of BamB from Pseudomonas aeruginosa

PDB ID 4hdj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4hdj"
Personal tools