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4ip3

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Complex structure of OspI and Ubc13

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Retrieved from "http://52.214.119.220/wiki/index.php/4ip3"

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 ==Complex structure of OspI and Ubc13==
-<StructureSection load='4ip3' size='340' side='right' caption='[[4ip3]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+<StructureSection load='4ip3' size='340' side='right'caption='[[4ip3]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4ip3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"shigella_paradysenteriae"_weldin_1927 "shigella paradysenteriae" weldin 1927] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IP3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IP3 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4ip3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Shigella_flexneri Shigella flexneri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IP3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IP3 FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CP0209, ORF169b, OspI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=623 "Shigella paradysenteriae" Weldin 1927]), BLU, Ubc13, UBE2N ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquitin--protein_ligase Ubiquitin--protein ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.19 6.3.2.19] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ip3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ip3 OCA], [https://pdbe.org/4ip3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ip3 RCSB], [https://www.ebi.ac.uk/pdbsum/4ip3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ip3 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ip3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ip3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ip3 RCSB], [http://www.ebi.ac.uk/pdbsum/4ip3 PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/UBE2N_HUMAN UBE2N_HUMAN]] The UBE2V1-UBE2N and UBE2V2-UBE2N heterodimers catalyze the synthesis of non-canonical 'Lys-63'-linked polyubiquitin chains. This type of polyubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage. Acts together with the E3 ligases, HLTF and SHPRH, in the 'Lys-63'-linked poly-ubiquitination of PCNA upon genotoxic stress, which is required for DNA repair. Appears to act together with E3 ligase RNF5 in the 'Lys-63'-linked polyubiquitination of JKAMP thereby regulating JKAMP function by decreasing its association with components of the proteasome and ERAD. Promotes TRIM5 capsid-specific restriction activity and the UBE2V1-UBE2N heterodimer acts in concert with TRIM5 to generate 'Lys-63'-linked polyubiquitin chains which activate the MAP3K7/TAK1 complex which in turn results in the induction and expression of NF-kappa-B and MAPK-responsive inflammatory genes (By similarity).<ref>PMID:10089880</ref> <ref>PMID:14562038</ref> <ref>PMID:19269966</ref> <ref>PMID:20061386</ref> <ref>PMID:21512573</ref>
+[https://www.uniprot.org/uniprot/Q8VSD5_SHIFL Q8VSD5_SHIFL]
 ==See Also==
-*[[Ubiquitin conjugating enzyme|Ubiquitin conjugating enzyme]]
+*[[3D structures of ubiquitin conjugating enzyme|3D structures of ubiquitin conjugating enzyme]]
-== References ==
-<references/>
 __TOC__
 </StructureSection>
-[[Category: Shigella paradysenteriae weldin 1927]]
+[[Category: Homo sapiens]]
-[[Category: Human]]
+[[Category: Large Structures]]
-[[Category: Ubiquitin--protein ligase]]
+[[Category: Shigella flexneri]]
-[[Category: Fu, P]]
+[[Category: Fu P]]
-[[Category: Jin, M]]
+[[Category: Jin M]]
-[[Category: Xia, Z]]
+[[Category: Xia Z]]
-[[Category: Xu, L]]
+[[Category: Xu L]]
-[[Category: Zhang, X]]
+[[Category: Zhang X]]
-[[Category: Zhu, Y]]
+[[Category: Zhu Y]]
-[[Category: Papain fold]]
-[[Category: Unknown function-ligase complex]]

4ip3

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Complex structure of OspI and Ubc13

Structural highlights

Function

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