This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4jrg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:06, 1 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_4jrg| PDB=4jrg | SCENE= }}
 
-
===The 1.9A crystal structure of humanized Xenopus MDM2 with RO5313109 - a pyrrolidine MDM2 inhibitor===
 
-
{{ABSTRACT_PUBMED_23808545}}
 
-
==Function==
+
==The 1.9A crystal structure of humanized Xenopus MDM2 with RO5313109 - a pyrrolidine MDM2 inhibitor==
-
[[http://www.uniprot.org/uniprot/MDM2_XENLA MDM2_XENLA]] E3 ubiquitin-protein ligase that mediates ubiquitination of p53/TP53, leading to its degration by the proteasome (By similarity).
+
<StructureSection load='4jrg' size='340' side='right'caption='[[4jrg]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4jrg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JRG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JRG FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=I09:(3R,4R,5S)-3-(3-CHLOROPHENYL)-4-(4-CHLOROPHENYL)-4-CYANO-N-[(3S)-3,4-DIHYDROXYBUTYL]-5-(2,2-DIMETHYLPROPYL)-D-PROLINAMIDE'>I09</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jrg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jrg OCA], [https://pdbe.org/4jrg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jrg RCSB], [https://www.ebi.ac.uk/pdbsum/4jrg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jrg ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MDM2_XENLA MDM2_XENLA] E3 ubiquitin-protein ligase that mediates ubiquitination of p53/TP53, leading to its degration by the proteasome (By similarity).
-
==About this Structure==
+
==See Also==
-
[[4jrg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/African_clawed_frog African clawed frog]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JRG OCA].
+
*[[MDM2 3D structures|MDM2 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:023808545</ref><references group="xtra"/><references/>
+
[[Category: Large Structures]]
-
[[Category: African clawed frog]]
+
[[Category: Xenopus laevis]]
-
[[Category: Graves, B J.]]
+
[[Category: Graves BJ]]
-
[[Category: Janson, C A.]]
+
[[Category: Janson CA]]
-
[[Category: Lukacs, C.]]
+
[[Category: Lukacs C]]
-
[[Category: E3 ubiquitin ligase]]
+
-
[[Category: Ligase-ligase inhibitor complex]]
+
-
[[Category: Nucleus]]
+
-
[[Category: P53]]
+
-
[[Category: Protein-inhibitor complex]]
+
-
[[Category: Pyrrolidine]]
+

Current revision

The 1.9A crystal structure of humanized Xenopus MDM2 with RO5313109 - a pyrrolidine MDM2 inhibitor

PDB ID 4jrg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools