This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2jh8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:14, 6 March 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2jh8.gif|left|200px]]
 
-
{{Structure
+
==The structure of bluetongue virus VP4 reveals a multifunctional RNA- capping production-line==
-
|PDB= 2jh8 |SIZE=350|CAPTION= <scene name='initialview01'>2jh8</scene>, resolution 3.22&Aring;
+
<StructureSection load='2jh8' size='340' side='right'caption='[[2jh8]], [[Resolution|resolution]] 3.22&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Gun+Binding+Site+For+Chain+A'>AC1</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=M7G:7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE'>M7G</scene> and <scene name='pdbligand=GUN:GUANINE'>GUN</scene>
+
<table><tr><td colspan='2'>[[2jh8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bluetongue_virus_(serotype_10_/_American_isolate) Bluetongue virus (serotype 10 / American isolate)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JH8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JH8 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.22&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GUN:GUANINE'>GUN</scene>, <scene name='pdbligand=M7G:7N-METHYL-8-HYDROGUANOSINE-5-DIPHOSPHATE'>M7G</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jh8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jh8 OCA], [https://pdbe.org/2jh8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jh8 RCSB], [https://www.ebi.ac.uk/pdbsum/2jh8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jh8 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q65751_BTV1X Q65751_BTV1X] The VP4 protein is one of the five proteins (with VP1, VP3, VP6 and VP7) which form the inner capsid of the virus.[ARBA:ARBA00002541]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jh/2jh8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jh8 ConSurf].
 +
<div style="clear:both"></div>
-
'''THE STRUCTURE OF BLUETONGUE VIRUS VP4 REVEALS A MULTIFUNCTIONAL RNA-CAPPING PRODUCTION-LINE'''
+
==See Also==
-
 
+
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
-
 
+
__TOC__
-
==Overview==
+
</StructureSection>
-
Eukaryotic organisms cap the 5' ends of their messenger RNAs by a series of four chemical reactions. Some viruses achieve this using a single molecule; the crystal structure of such an enzyme from bluetongue virus reveals an elongated modular architecture that provides a scaffold for an assemblage of active sites, two contributed by a domain of novel structure.
+
[[Category: Large Structures]]
-
 
+
[[Category: Grimes JM]]
-
==About this Structure==
+
[[Category: Roy P]]
-
2JH8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bluetongue_virus_10_(isolate_usa) Bluetongue virus 10 (isolate usa)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JH8 OCA].
+
[[Category: Stuart DI]]
-
 
+
[[Category: Sutton G]]
-
==Reference==
+
-
Bluetongue virus VP4 is an RNA-capping assembly line., Sutton G, Grimes JM, Stuart DI, Roy P, Nat Struct Mol Biol. 2007 May;14(5):449-51. Epub 2007 Apr 8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17417654 17417654]
+
-
[[Category: Bluetongue virus 10 (isolate usa)]]
+
-
[[Category: Single protein]]
+
-
[[Category: Grimes, J M.]]
+
-
[[Category: Roy, P.]]
+
-
[[Category: Stuart, D I.]]
+
-
[[Category: Sutton, G.]]
+
-
[[Category: GUN]]
+
-
[[Category: M7G]]
+
-
[[Category: core protein]]
+
-
[[Category: guanylyltransferase]]
+
-
[[Category: methyltransferase]]
+
-
[[Category: viral capping enzyme]]
+
-
[[Category: viral protein]]
+
-
[[Category: virion protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:41:53 2008''
+

Current revision

The structure of bluetongue virus VP4 reveals a multifunctional RNA- capping production-line

PDB ID 2jh8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools