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5bz5

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==Crystal structure of the RNA-binding domain of yeast Puf5p bound to AMN1 RNA==
==Crystal structure of the RNA-binding domain of yeast Puf5p bound to AMN1 RNA==
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<StructureSection load='5bz5' size='340' side='right' caption='[[5bz5]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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<StructureSection load='5bz5' size='340' side='right'caption='[[5bz5]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5bz5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5BZ5 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5bz5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5BZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5BZ5 FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5bym|5bym]], [[5bz1|5bz1]]</td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MPT5, HTR1, PUF5, YGL178W, BIC834 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5bz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bz5 OCA], [https://pdbe.org/5bz5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5bz5 RCSB], [https://www.ebi.ac.uk/pdbsum/5bz5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5bz5 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5bz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5bz5 OCA], [http://pdbe.org/5bz5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5bz5 RCSB], [http://www.ebi.ac.uk/pdbsum/5bz5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5bz5 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/MPT5_YEAST MPT5_YEAST]] RNA-binding protein involved in post-transcriptional regulation. Negatively regulates expression of HO by binding to the 3'-UTR of HO mRNA. Predominantly binds to mRNAs encoding chromatin modifiers and spindle pole body components. Recognizes and binds to 5'-TGTAA[CT]A[AT]TA-3' in the 3'-UTR of target mRNAs. Multicopy suppressor of POP2 mutation. Required for high temperature growth.<ref>PMID:11157761</ref>
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[https://www.uniprot.org/uniprot/MPT5_YEAST MPT5_YEAST] RNA-binding protein involved in post-transcriptional regulation. Negatively regulates expression of HO by binding to the 3'-UTR of HO mRNA. Predominantly binds to mRNAs encoding chromatin modifiers and spindle pole body components. Recognizes and binds to 5'-TGTAA[CT]A[AT]TA-3' in the 3'-UTR of target mRNAs. Multicopy suppressor of POP2 mutation. Required for high temperature growth.<ref>PMID:11157761</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Proteins bind and control mRNAs, directing their localization, translation and stability. Members of the PUF family of RNA-binding proteins control multiple mRNAs in a single cell, and play key roles in development, stem cell maintenance and memory formation. Here we identified the mRNA targets of a S. cerevisiae PUF protein, Puf5p, by ultraviolet-crosslinking-affinity purification and high-throughput sequencing (HITS-CLIP). The binding sites recognized by Puf5p are diverse, with variable spacer lengths between two specific sequences. Each length of site correlates with a distinct biological function. Crystal structures of Puf5p-RNA complexes reveal that the protein scaffold presents an exceptionally flat and extended interaction surface relative to other PUF proteins. In complexes with RNAs of different lengths, the protein is unchanged. A single PUF protein repeat is sufficient to induce broadening of specificity. Changes in protein architecture, such as alterations in curvature, may lead to evolution of mRNA regulatory networks.
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RNA regulatory networks diversified through curvature of the PUF protein scaffold.,Wilinski D, Qiu C, Lapointe CP, Nevil M, Campbell ZT, Tanaka Hall TM, Wickens M Nat Commun. 2015 Sep 14;6:8213. doi: 10.1038/ncomms9213. PMID:26364903<ref>PMID:26364903</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5bz5" style="background-color:#fffaf0;"></div>
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== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Baker's yeast]]
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[[Category: Large Structures]]
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[[Category: Hall, T M.T]]
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[[Category: Saccharomyces cerevisiae S288C]]
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[[Category: Qiu, C]]
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[[Category: Synthetic construct]]
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[[Category: Puf rna-binding domain]]
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[[Category: Hall TMT]]
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[[Category: Rna binding protein-rna complex]]
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[[Category: Qiu C]]

Current revision

Crystal structure of the RNA-binding domain of yeast Puf5p bound to AMN1 RNA

PDB ID 5bz5

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