This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5sdc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5sdc" [edit=sysop:move=sysop])
Current revision (15:30, 6 March 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5sdc is ON HOLD
+
==PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434912==
 +
<StructureSection load='5sdc' size='340' side='right'caption='[[5sdc]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5sdc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5SDC FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.928&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=LDV:3-[(4-methylpiperidin-1-yl)methyl]-1H-indole'>LDV</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5sdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sdc OCA], [https://pdbe.org/5sdc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5sdc RCSB], [https://www.ebi.ac.uk/pdbsum/5sdc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5sdc ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DPP11_PORG3 DPP11_PORG3] Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. Shows a strict specificity for acidic residues (Asp or Glu) in the P1 position, and has a hydrophobic residue preference at the P2 position. Preferentially cleaves the synthetic substrate Leu-Asp-methylcoumaryl-7-amide (Leu-Asp-MCA) as compared to Leu-Glu-MCA. Is involved in amino acid metabolism and bacterial growth of asaccharolytic P.gingivalis, that utilizes amino acids from extracellular proteinaceous nutrients as energy and carbon sources.<ref>PMID:21896480</ref> <ref>PMID:23246913</ref>
-
Authors: Tham, C.T., Coker, J.A., Krojer, T., Foster, W.R., Koekemoer, L., Douangamath, A., Talon, R., Fearon, D., von Delft, F., Yue, W.W., Bountra, C., Bezerra, G.A.
+
==See Also==
-
 
+
*[[Dipeptidyl peptidase 3D structures|Dipeptidyl peptidase 3D structures]]
-
Description: PanDDA analysis group deposition --Crystal Structure of Porphyromonas gingivalis in complex with Z2856434912
+
== References ==
-
[[Category: Unreleased Structures]]
+
<references/>
-
[[Category: Foster, W.R]]
+
__TOC__
-
[[Category: Talon, R]]
+
</StructureSection>
-
[[Category: Bezerra, G.A]]
+
[[Category: Large Structures]]
-
[[Category: Douangamath, A]]
+
[[Category: Porphyromonas gingivalis]]
-
[[Category: Fearon, D]]
+
[[Category: Bezerra GA]]
-
[[Category: Krojer, T]]
+
[[Category: Bountra C]]
-
[[Category: Tham, C.T]]
+
[[Category: Coker JA]]
-
[[Category: Coker, J.A]]
+
[[Category: Douangamath A]]
-
[[Category: Yue, W.W]]
+
[[Category: Fearon D]]
-
[[Category: Von Delft, F]]
+
[[Category: Foster WR]]
-
[[Category: Bountra, C]]
+
[[Category: Koekemoer L]]
-
[[Category: Koekemoer, L]]
+
[[Category: Krojer T]]
 +
[[Category: Talon R]]
 +
[[Category: Tham CT]]
 +
[[Category: Yue WW]]
 +
[[Category: Von Delft F]]

Current revision

PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434912

PDB ID 5sdc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5sdc"
Personal tools