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5sdf

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(New page: '''Unreleased structure''' The entry 5sdf is ON HOLD Authors: Tham, C.T., Coker, J.A., Krojer, T., Foster, W.R., Koekemoer, L., Douangamath, A., Talon, R., Fearon, D., von Delft, F., Yu...)
Current revision (15:31, 6 March 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5sdf is ON HOLD
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==PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434834==
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<StructureSection load='5sdf' size='340' side='right'caption='[[5sdf]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5sdf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5SDF FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.877&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NT7:N-(2,3-dimethylphenyl)-2-(morpholin-4-yl)acetamide'>NT7</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5sdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sdf OCA], [https://pdbe.org/5sdf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5sdf RCSB], [https://www.ebi.ac.uk/pdbsum/5sdf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5sdf ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DPP11_PORG3 DPP11_PORG3] Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. Shows a strict specificity for acidic residues (Asp or Glu) in the P1 position, and has a hydrophobic residue preference at the P2 position. Preferentially cleaves the synthetic substrate Leu-Asp-methylcoumaryl-7-amide (Leu-Asp-MCA) as compared to Leu-Glu-MCA. Is involved in amino acid metabolism and bacterial growth of asaccharolytic P.gingivalis, that utilizes amino acids from extracellular proteinaceous nutrients as energy and carbon sources.<ref>PMID:21896480</ref> <ref>PMID:23246913</ref>
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Authors: Tham, C.T., Coker, J.A., Krojer, T., Foster, W.R., Koekemoer, L., Douangamath, A., Talon, R., Fearon, D., von Delft, F., Yue, W.W., Bountra, C., Bezerra, G.A.
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==See Also==
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*[[Dipeptidyl peptidase 3D structures|Dipeptidyl peptidase 3D structures]]
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Description: PanDDA analysis group deposition --Crystal Structure of Porphyromonas gingivalis in complex with Z2856434834
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== References ==
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[[Category: Unreleased Structures]]
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<references/>
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[[Category: Foster, W.R]]
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__TOC__
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[[Category: Talon, R]]
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</StructureSection>
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[[Category: Bezerra, G.A]]
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[[Category: Large Structures]]
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[[Category: Douangamath, A]]
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[[Category: Porphyromonas gingivalis]]
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[[Category: Fearon, D]]
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[[Category: Bezerra GA]]
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[[Category: Krojer, T]]
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[[Category: Bountra C]]
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[[Category: Yue, W.W]]
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[[Category: Coker JA]]
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[[Category: Coker, J.A]]
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[[Category: Douangamath A]]
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[[Category: Tham, C.T]]
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[[Category: Fearon D]]
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[[Category: Von Delft, F]]
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[[Category: Foster WR]]
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[[Category: Bountra, C]]
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[[Category: Koekemoer L]]
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[[Category: Koekemoer, L]]
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[[Category: Krojer T]]
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[[Category: Talon R]]
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[[Category: Tham CT]]
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[[Category: Yue WW]]
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[[Category: Von Delft F]]

Current revision

PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z2856434834

PDB ID 5sdf

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