This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5t5h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:36, 6 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Large structure}}
+
 
==Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit==
==Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit==
-
<StructureSection load='5t5h' size='340' side='right' caption='[[5t5h]], [[Resolution|resolution]] 2.54&Aring;' scene=''>
+
<SX load='5t5h' size='340' side='right' viewer='molstar' caption='[[5t5h]], [[Resolution|resolution]] 2.54&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5t5h]] is a 46 chain structure with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_cruzi Trypanosoma cruzi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5T5H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5T5H FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5t5h]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_cruzi Trypanosoma cruzi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5T5H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5T5H FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 2.54&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5MC:5-METHYLCYTIDINE-5-MONOPHOSPHATE'>5MC</scene>, <scene name='pdbligand=7MG:7N-METHYL-8-HYDROGUANOSINE-5-MONOPHOSPHATE'>7MG</scene>, <scene name='pdbligand=A2M:2-O-METHYLADENOSINE+5-(DIHYDROGEN+PHOSPHATE)'>A2M</scene>, <scene name='pdbligand=OMC:O2-METHYLYCYTIDINE-5-MONOPHOSPHATE'>OMC</scene>, <scene name='pdbligand=OMG:O2-METHYLGUANOSINE-5-MONOPHOSPHATE'>OMG</scene>, <scene name='pdbligand=OMU:O2-METHYLURIDINE+5-MONOPHOSPHATE'>OMU</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5MC:5-METHYLCYTIDINE-5-MONOPHOSPHATE'>5MC</scene>, <scene name='pdbligand=7MG:7N-METHYL-8-HYDROGUANOSINE-5-MONOPHOSPHATE'>7MG</scene>, <scene name='pdbligand=A2M:2-O-METHYLADENOSINE+5-(DIHYDROGEN+PHOSPHATE)'>A2M</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OMC:O2-METHYLYCYTIDINE-5-MONOPHOSPHATE'>OMC</scene>, <scene name='pdbligand=OMG:O2-METHYLGUANOSINE-5-MONOPHOSPHATE'>OMG</scene>, <scene name='pdbligand=OMU:O2-METHYLURIDINE+5-MONOPHOSPHATE'>OMU</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5t5h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5t5h OCA], [http://pdbe.org/5t5h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5t5h RCSB], [http://www.ebi.ac.uk/pdbsum/5t5h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5t5h ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5t5h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5t5h OCA], [https://pdbe.org/5t5h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5t5h RCSB], [https://www.ebi.ac.uk/pdbsum/5t5h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5t5h ProSAT]</span></td></tr>
</table>
</table>
-
{{Large structure}}
 
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/Q4DXW6_TRYCC Q4DXW6_TRYCC]] Binds to the 23S rRNA.[RuleBase:RU000576]
+
[https://www.uniprot.org/uniprot/RL18_TRYCC RL18_TRYCC]
 +
 
 +
==See Also==
 +
*[[Ribosome 3D structures|Ribosome 3D structures]]
__TOC__
__TOC__
-
</StructureSection>
+
</SX>
 +
[[Category: Large Structures]]
[[Category: Trypanosoma cruzi]]
[[Category: Trypanosoma cruzi]]
-
[[Category: Espina, N]]
+
[[Category: Espina N]]
-
[[Category: Frank, J]]
+
[[Category: Frank J]]
-
[[Category: Grassucci, R A]]
+
[[Category: Grassucci RA]]
-
[[Category: Gutierrez-Vargas, C]]
+
[[Category: Gutierrez-Vargas C]]
-
[[Category: Liu, Z]]
+
[[Category: Liu Z]]
-
[[Category: Madison-Antenucci, S]]
+
[[Category: Madison-Antenucci S]]
-
[[Category: Ramesh, M]]
+
[[Category: Ramesh M]]
-
[[Category: Sun, M]]
+
[[Category: Sun M]]
-
[[Category: Tong, L]]
+
[[Category: Tong L]]
-
[[Category: Tutuncuoglu, B]]
+
[[Category: Tutuncuoglu B]]
-
[[Category: Wei, J]]
+
[[Category: Wei J]]
-
[[Category: Woolford, J L]]
+
[[Category: Woolford Jr JL]]
-
[[Category: 5 angstrom cryo-em structure]]
+
-
[[Category: Assmebly]]
+
-
[[Category: Multiply fragmented rrna]]
+
-
[[Category: Ribosomal subunit]]
+
-
[[Category: Ribosome]]
+

Current revision

Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit

5t5h, resolution 2.54Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools