This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1kjp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:25, 13 March 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1kjp.jpg|left|200px]]
 
-
{{Structure
+
==Thermolysin complexed with Z-L-Glutamic acid (benzyloxycarbonyl-L-Glutamic acid)==
-
|PDB= 1kjp |SIZE=350|CAPTION= <scene name='initialview01'>1kjp</scene>, resolution 1.60&Aring;
+
<StructureSection load='1kjp' size='340' side='right'caption='[[1kjp]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLU:GLUTAMIC+ACID'>GLU</scene>, <scene name='pdbligand=PHQ:FORMIC+ACID+BENZYL+ESTER'>PHQ</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
+
<table><tr><td colspan='2'>[[1kjp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_thermoproteolyticus Bacillus thermoproteolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KJP FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Thermolysin Thermolysin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.27 3.4.24.27] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLU:GLUTAMIC+ACID'>GLU</scene>, <scene name='pdbligand=PHQ:BENZYL+CHLOROCARBONATE'>PHQ</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kjp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kjp OCA], [https://pdbe.org/1kjp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kjp RCSB], [https://www.ebi.ac.uk/pdbsum/1kjp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kjp ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[1kei|1KEI]], [[1kjo|1KJO]], [[1kkk|1KKK]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kjp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kjp OCA], [http://www.ebi.ac.uk/pdbsum/1kjp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1kjp RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/THER_BACTH THER_BACTH] Extracellular zinc metalloprotease.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kj/1kjp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kjp ConSurf].
 +
<div style="clear:both"></div>
-
'''Thermolysin complexed with Z-L-Glutamic acid (benzyloxycarbonyl-L-Glutamic acid)'''
+
==See Also==
-
 
+
*[[Thermolysin 3D structures|Thermolysin 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1KJP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_thermoproteolyticus Bacillus thermoproteolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJP OCA].
+
[[Category: Bacillus thermoproteolyticus]]
[[Category: Bacillus thermoproteolyticus]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Thermolysin]]
+
[[Category: Kidokoro S]]
-
[[Category: Kidokoro, S.]]
+
[[Category: Senda M]]
-
[[Category: Senda, M.]]
+
[[Category: Senda T]]
-
[[Category: Senda, T.]]
+
-
[[Category: benzyloxycarbonyl amino acid]]
+
-
[[Category: hydrolase]]
+
-
[[Category: metalloproteinase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 21:49:33 2008''
+

Current revision

Thermolysin complexed with Z-L-Glutamic acid (benzyloxycarbonyl-L-Glutamic acid)

PDB ID 1kjp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools