This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1px8
From Proteopedia
(Difference between revisions)
m (Protected "1px8" [edit=sysop:move=sysop]) |
|||
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1px8.png|left|200px]] | ||
| - | + | ==Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase== | |
| + | <StructureSection load='1px8' size='340' side='right'caption='[[1px8]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[1px8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoanaerobacterium_saccharolyticum Thermoanaerobacterium saccharolyticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PX8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PX8 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1px8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1px8 OCA], [https://pdbe.org/1px8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1px8 RCSB], [https://www.ebi.ac.uk/pdbsum/1px8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1px8 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/XYNB_THESA XYNB_THESA] Has hydrolytic activity towards xylopentaose, xylotriose, xylobiose and P-nitrophenyl-beta-D-xylopyranoside, but has no activity toward xylan. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/px/1px8_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1px8 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | == | + | ==See Also== |
| - | + | *[[Xylosidase 3D structures|Xylosidase 3D structures]] | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Large Structures]] | |
| - | [[ | + | |
| - | + | ||
| - | + | ||
| - | < | + | |
[[Category: Thermoanaerobacterium saccharolyticum]] | [[Category: Thermoanaerobacterium saccharolyticum]] | ||
| - | [[Category: | + | [[Category: Ahn HJ]] |
| - | [[Category: | + | [[Category: Berendzen J]] |
| - | [[Category: | + | [[Category: Il Lee B]] |
| - | [[Category: Laivenieks | + | [[Category: Laivenieks M]] |
| - | + | [[Category: Liong EC]] | |
| - | [[Category: Liong | + | [[Category: Pedelacq JD]] |
| - | [[Category: Pedelacq | + | [[Category: Suh SW]] |
| - | [[Category: Suh | + | [[Category: Vieille C]] |
| - | [[Category: Vieille | + | [[Category: Vocadlo DJ]] |
| - | [[Category: Vocadlo | + | [[Category: Withers SG]] |
| - | [[Category: Withers | + | [[Category: Yang JK]] |
| - | [[Category: Yang | + | [[Category: Yoon HJ]] |
| - | [[Category: Yoon | + | [[Category: Zeikus GJ]] |
| - | [[Category: Zeikus | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase
| |||||||||||
