This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1u8w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:31, 13 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1u8w.png|left|200px]]
 
-
<!--
+
==Crystal structure of Arabidopsis thaliana nucleoside diphosphate kinase 1==
-
The line below this paragraph, containing "STRUCTURE_1u8w", creates the "Structure Box" on the page.
+
<StructureSection load='1u8w' size='340' side='right'caption='[[1u8w]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1u8w]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U8W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U8W FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u8w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u8w OCA], [https://pdbe.org/1u8w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u8w RCSB], [https://www.ebi.ac.uk/pdbsum/1u8w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u8w ProSAT]</span></td></tr>
-
{{STRUCTURE_1u8w| PDB=1u8w | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NDK1_ARATH NDK1_ARATH] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Plays a role in response to reactive oxygen species (ROS) stress.<ref>PMID:14581623</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u8/1u8w_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u8w ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of Arabidopsis thaliana nucleoside diphosphate kinase 1===
+
==See Also==
-
 
+
*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15465053}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 15465053 is the PubMed ID number.
+
</StructureSection>
-
-->
+
-
{{ABSTRACT_PUBMED_15465053}}
+
-
 
+
-
==About this Structure==
+
-
1U8W is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U8W OCA].
+
-
 
+
-
==Reference==
+
-
Structural analysis of Arabidopsis thaliana nucleoside diphosphate kinase-2 for phytochrome-mediated light signaling., Im YJ, Kim JI, Shen Y, Na Y, Han YJ, Kim SH, Song PS, Eom SH, J Mol Biol. 2004 Oct 22;343(3):659-70. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15465053 15465053]
+
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
-
[[Category: Nucleoside-diphosphate kinase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Eom SH]]
-
[[Category: Eom, S H.]]
+
[[Category: Han Y-J]]
-
[[Category: Han, Y J.]]
+
[[Category: Im YJ]]
-
[[Category: Im, Y J.]]
+
[[Category: Kim J-I]]
-
[[Category: Kim, J I.]]
+
[[Category: Kim S-H]]
-
[[Category: Kim, S H.]]
+
[[Category: Na Y]]
-
[[Category: Na, Y.]]
+
[[Category: Shen Y]]
-
[[Category: Shen, Y.]]
+
[[Category: Song P-S]]
-
[[Category: Song, P S.]]
+
-
[[Category: Kinase]]
+
-
[[Category: Nucleotide diphosphate]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 21:16:20 2008''
+

Current revision

Crystal structure of Arabidopsis thaliana nucleoside diphosphate kinase 1

PDB ID 1u8w

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1u8w"
Personal tools