1wr8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:33, 13 March 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1wr8.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of hypothetical protein PH1421 from Pyrococcus horikoshii.==
-
|PDB= 1wr8 |SIZE=350|CAPTION= <scene name='initialview01'>1wr8</scene>, resolution 1.6&Aring;
+
<StructureSection load='1wr8' size='340' side='right'caption='[[1wr8]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ACT:ACETATE ION'>ACT</scene>
+
<table><tr><td colspan='2'>[[1wr8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WR8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WR8 FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Phosphoglycolate_phosphatase Phosphoglycolate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.18 3.1.3.18]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
|GENE= PH1421 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 Pyrococcus horikoshii])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wr8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wr8 OCA], [https://pdbe.org/1wr8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wr8 RCSB], [https://www.ebi.ac.uk/pdbsum/1wr8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wr8 ProSAT], [https://www.topsan.org/Proteins/RSGI/1wr8 TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of hypothetical protein PH1421 from Pyrococcus horikoshii.'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/PGP_PYRHO PGP_PYRHO] Catalyzes the dephosphorylation of 2-phosphoglycolate (By similarity). Has phosphatase activity towards p-nitrophenylphosphate (in vitro).[HAMAP-Rule:MF_01419]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1WR8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WR8 OCA].
+
Check<jmol>
-
[[Category: Phosphoglycolate phosphatase]]
+
<jmolCheckbox>
-
[[Category: Pyrococcus horikoshii]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wr/1wr8_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Kunishima, N.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
</jmolCheckbox>
-
[[Category: Yamamoto, H.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wr8 ConSurf].
-
[[Category: ACT]]
+
<div style="clear:both"></div>
-
[[Category: alpha / beta core domain]]
+
__TOC__
-
[[Category: had superfamily]]
+
</StructureSection>
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Large Structures]]
-
[[Category: rsgi]]
+
[[Category: Pyrococcus horikoshii OT3]]
-
[[Category: structural genomic]]
+
[[Category: Kunishima N]]
-
 
+
[[Category: Yamamoto H]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:00:35 2008''
+

Current revision

Crystal structure of hypothetical protein PH1421 from Pyrococcus horikoshii.

PDB ID 1wr8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools