This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1wra

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:33, 13 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1wra.png|left|200px]]
 
-
<!--
+
==Crystal Structure of Phosphorylcholine Esterase Domain of the Virulence Factor Choline Binding Protein E from Streptococcus Pneumoniae==
-
The line below this paragraph, containing "STRUCTURE_1wra", creates the "Structure Box" on the page.
+
<StructureSection load='1wra' size='340' side='right'caption='[[1wra]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1wra]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_R6 Streptococcus pneumoniae R6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WRA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WRA FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PC:PHOSPHOCHOLINE'>PC</scene></td></tr>
-
{{STRUCTURE_1wra| PDB=1wra | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wra FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wra OCA], [https://pdbe.org/1wra PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wra RCSB], [https://www.ebi.ac.uk/pdbsum/1wra PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wra ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of Phosphorylcholine Esterase Domain of the Virulence Factor Choline Binding Protein E from Streptococcus Pneumoniae===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q8DQ62_STRR6 Q8DQ62_STRR6]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_15908436}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15908436 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wr/1wra_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_15908436}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1WRA is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WRA OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wra ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:15908436</ref><ref group="xtra">PMID:11260477</ref><ref group="xtra">PMID:11694890</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Glycerophosphocholine cholinephosphodiesterase]]
+
[[Category: Large Structures]]
-
[[Category: Streptococcus pneumoniae]]
+
[[Category: Streptococcus pneumoniae R6]]
-
[[Category: Dideberg, O.]]
+
[[Category: Dideberg O]]
-
[[Category: Garau, G.]]
+
[[Category: Garau G]]
-
[[Category: Binding]]
+
-
[[Category: Cbpe]]
+
-
[[Category: Choline]]
+
-
[[Category: Domain]]
+
-
[[Category: Esterase]]
+
-
[[Category: Iron]]
+
-
[[Category: Lactamase]]
+
-
[[Category: Metallo]]
+
-
[[Category: Pce]]
+
-
[[Category: Phosphocholine]]
+
-
[[Category: Pneum]]
+
-
[[Category: Streptococcus]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 02:14:30 2009''
+

Current revision

Crystal Structure of Phosphorylcholine Esterase Domain of the Virulence Factor Choline Binding Protein E from Streptococcus Pneumoniae

PDB ID 1wra

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools