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1yd6

From Proteopedia

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{{Seed}}
 
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[[Image:1yd6.png|left|200px]]
 
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==Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax==
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The line below this paragraph, containing "STRUCTURE_1yd6", creates the "Structure Box" on the page.
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<StructureSection load='1yd6' size='340' side='right'caption='[[1yd6]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1yd6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_caldotenax Bacillus caldotenax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YD6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YD6 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_1yd6| PDB=1yd6 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yd6 OCA], [https://pdbe.org/1yd6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yd6 RCSB], [https://www.ebi.ac.uk/pdbsum/1yd6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yd6 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/UVRC_GEOKA UVRC_GEOKA] The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.[HAMAP-Rule:MF_00203]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yd/1yd6_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yd6 ConSurf].
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<div style="clear:both"></div>
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===Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax===
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==See Also==
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*[[UvrABC|UvrABC]]
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__TOC__
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_15692561}}, adds the Publication Abstract to the page
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[[Category: Large Structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 15692561 is the PubMed ID number.
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[[Category: Croteau DL]]
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[[Category: DellaVecchia MJ]]
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{{ABSTRACT_PUBMED_15692561}}
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[[Category: Karakas E]]
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[[Category: Kisker C]]
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==About this Structure==
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[[Category: Rhau B]]
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1YD6 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_caldotenax Bacillus caldotenax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YD6 OCA].
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[[Category: Skorvaga M]]
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[[Category: Truglio JJ]]
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==Reference==
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[[Category: Van Houten B]]
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<ref group="xtra">PMID:15692561</ref><references group="xtra"/>
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[[Category: Wang H]]
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[[Category: Bacillus caldotenax]]
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[[Category: Wang L]]
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[[Category: Croteau, D L.]]
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[[Category: DellaVecchia, M J.]]
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[[Category: Houten, B Van.]]
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[[Category: Karakas, E.]]
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[[Category: Kisker, C.]]
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[[Category: Rhau, B.]]
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[[Category: Skorvaga, M.]]
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[[Category: Truglio, J J.]]
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[[Category: Wang, H.]]
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[[Category: Wang, L.]]
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[[Category: Dna binding protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 04:22:23 2009''
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Current revision

Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax

PDB ID 1yd6

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