This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ynq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:38, 13 March 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ynq.png|left|200px]]
 
-
<!--
+
==aldo-keto reductase AKR11C1 from Bacillus halodurans (holo form)==
-
The line below this paragraph, containing "STRUCTURE_1ynq", creates the "Structure Box" on the page.
+
<StructureSection load='1ynq' size='340' side='right'caption='[[1ynq]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ynq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans_C-125 Alkalihalobacillus halodurans C-125]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YNQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YNQ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1ynq| PDB=1ynq | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ynq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ynq OCA], [https://pdbe.org/1ynq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ynq RCSB], [https://www.ebi.ac.uk/pdbsum/1ynq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ynq ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9KE47_HALH5 Q9KE47_HALH5]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yn/1ynq_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ynq ConSurf].
 +
<div style="clear:both"></div>
-
===aldo-keto reductase AKR11C1 from Bacillus halodurans (holo form)===
+
==See Also==
-
 
+
*[[Aldo-keto reductase 3D structures|Aldo-keto reductase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_16242712}}, adds the Publication Abstract to the page
+
[[Category: Alkalihalobacillus halodurans C-125]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 16242712 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Kostrewa D]]
-
{{ABSTRACT_PUBMED_16242712}}
+
[[Category: Li XD]]
-
 
+
[[Category: Marquardt T]]
-
==About this Structure==
+
[[Category: Winkler FK]]
-
1YNQ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_halodurans Bacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YNQ OCA].
+
-
 
+
-
==Reference==
+
-
High-resolution crystal structure of AKR11C1 from Bacillus halodurans: an NADPH-dependent 4-hydroxy-2,3-trans-nonenal reductase., Marquardt T, Kostrewa D, Balakrishnan R, Gasperina A, Kambach C, Podjarny A, Winkler FK, Balendiran GK, Li XD, J Mol Biol. 2005 Nov 25;354(2):304-16. Epub 2005 Oct 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16242712 16242712]
+
-
[[Category: Bacillus halodurans]]
+
-
[[Category: Single protein]]
+
-
[[Category: Kostrewa, D.]]
+
-
[[Category: Li, X D.]]
+
-
[[Category: Marquardt, T.]]
+
-
[[Category: Winkler, F K.]]
+
-
[[Category: Akr11c1]]
+
-
[[Category: Aldo-keto reductase]]
+
-
[[Category: Bacillus haloduran]]
+
-
[[Category: Nadph]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 11:44:05 2008''
+

Current revision

aldo-keto reductase AKR11C1 from Bacillus halodurans (holo form)

PDB ID 1ynq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ynq"
Personal tools