This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2cwj
From Proteopedia
(Difference between revisions)
| (12 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2cwj.gif|left|200px]] | ||
| - | + | ==crystal structure of APE1501, a putative endonuclease from Aeropyrum pernix== | |
| - | + | <StructureSection load='2cwj' size='340' side='right'caption='[[2cwj]], [[Resolution|resolution]] 3.60Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2cwj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeropyrum_pernix_K1 Aeropyrum pernix K1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CWJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CWJ FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.6Å</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cwj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cwj OCA], [https://pdbe.org/2cwj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cwj RCSB], [https://www.ebi.ac.uk/pdbsum/2cwj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cwj ProSAT], [https://www.topsan.org/Proteins/RSGI/2cwj TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/Q9YBU8_AERPE Q9YBU8_AERPE] | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cw/2cwj_consurf.spt"</scriptWhenChecked> | |
| - | == | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | [[Category: Aeropyrum pernix | + | </jmolCheckbox> |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cwj ConSurf]. |
| - | [[Category: Murayama | + | <div style="clear:both"></div> |
| - | + | __TOC__ | |
| - | [[Category: Shirouzu | + | </StructureSection> |
| - | [[Category: Suetsugu-hanawa | + | [[Category: Aeropyrum pernix K1]] |
| - | [[Category: Takemoto-hori | + | [[Category: Large Structures]] |
| - | [[Category: Yokoyama | + | [[Category: Murayama K]] |
| - | + | [[Category: Shirouzu M]] | |
| - | + | [[Category: Suetsugu-hanawa K]] | |
| - | + | [[Category: Takemoto-hori C]] | |
| - | + | [[Category: Yokoyama S]] | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
crystal structure of APE1501, a putative endonuclease from Aeropyrum pernix
| |||||||||||
