2d1v
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2d1v" size="450" color="white" frame="true" align="right" spinBox="true" caption="2d1v, resolution 2.4Å" /> '''Crystal structure of ...) |
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| - | [[Image:2d1v.jpg|left|200px]]<br /><applet load="2d1v" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2d1v, resolution 2.4Å" /> | ||
| - | '''Crystal structure of DNA-binding domain of Bacillus subtilis YycF'''<br /> | ||
| - | == | + | ==Crystal structure of DNA-binding domain of Bacillus subtilis YycF== |
| - | + | <StructureSection load='2d1v' size='340' side='right'caption='[[2d1v]], [[Resolution|resolution]] 2.40Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2d1v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D1V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D1V FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d1v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d1v OCA], [https://pdbe.org/2d1v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d1v RCSB], [https://www.ebi.ac.uk/pdbsum/2d1v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d1v ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/WALR_BACSU WALR_BACSU] Member of the two-component regulatory system WalK/WalR involved in the regulation of the ftsAZ operon, the yocH, ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Binds to the ftsAZ P1 promoter sequence in vitro. WalR has been shown to directly bind to the regulatory regions of yocH, ykvT, tagAB/tagDEF. Activates cwlO, lytE and ydjM and represses yoeB and yjeA.<ref>PMID:10878122</ref> <ref>PMID:12950927</ref> <ref>PMID:17581128</ref> <ref>PMID:9829949</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d1/2d1v_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d1v ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Bacillus subtilis]] | [[Category: Bacillus subtilis]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Okada | + | [[Category: Okada A]] |
| - | [[Category: Okajima | + | [[Category: Okajima T]] |
| - | [[Category: Tanizawa | + | [[Category: Tanizawa K]] |
| - | [[Category: Utsumi | + | [[Category: Utsumi R]] |
| - | [[Category: Watanabe | + | [[Category: Watanabe T]] |
| - | [[Category: Yamamoto | + | [[Category: Yamamoto K]] |
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Current revision
Crystal structure of DNA-binding domain of Bacillus subtilis YycF
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