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2dsx

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{{Seed}}
 
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[[Image:2dsx.png|left|200px]]
 
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==Crystal structure of rubredoxin from Desulfovibrio gigas to ultra-high 0.68 A resolution==
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The line below this paragraph, containing "STRUCTURE_2dsx", creates the "Structure Box" on the page.
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<StructureSection load='2dsx' size='340' side='right'caption='[[2dsx]], [[Resolution|resolution]] 0.68&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2dsx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Megalodesulfovibrio_gigas Megalodesulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DSX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.68&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
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{{STRUCTURE_2dsx| PDB=2dsx | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dsx OCA], [https://pdbe.org/2dsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dsx RCSB], [https://www.ebi.ac.uk/pdbsum/2dsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dsx ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RUBR_MEGGA RUBR_MEGGA] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule. Electron acceptor for cytoplasmic lactate dehydrogenase.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ds/2dsx_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dsx ConSurf].
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<div style="clear:both"></div>
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===Crystal structure of rubredoxin from Desulfovibrio gigas to ultra-high 0.68 A resolution===
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==See Also==
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*[[Rubredoxin 3D structures|Rubredoxin 3D structures]]
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*[[Rubredoxin PDB structures|Rubredoxin PDB structures]]
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__TOC__
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The line below this paragraph, {{ABSTRACT_PUBMED_16930541}}, adds the Publication Abstract to the page
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</StructureSection>
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(as it appears on PubMed at http://www.pubmed.gov), where 16930541 is the PubMed ID number.
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[[Category: Large Structures]]
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-->
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[[Category: Megalodesulfovibrio gigas]]
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{{ABSTRACT_PUBMED_16930541}}
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[[Category: Chen C-J]]
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[[Category: Huang Y-C]]
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==About this Structure==
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[[Category: Lin Y-H]]
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2DSX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DSX OCA].
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[[Category: Liu M-Y]]
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==Reference==
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Crystal structure of rubredoxin from Desulfovibrio gigas to ultra-high 0.68 A resolution., Chen CJ, Lin YH, Huang YC, Liu MY, Biochem Biophys Res Commun. 2006 Oct 13;349(1):79-90. Epub 2006 Aug 11. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16930541 16930541]
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[[Category: Desulfovibrio gigas]]
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[[Category: Single protein]]
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[[Category: Chen, C J.]]
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[[Category: Huang, Y C.]]
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[[Category: Lin, Y H.]]
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[[Category: Liu, M Y.]]
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[[Category: Desulfovibrio giga]]
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[[Category: Redox]]
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[[Category: Rubredoxin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 10:38:33 2008''
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Current revision

Crystal structure of rubredoxin from Desulfovibrio gigas to ultra-high 0.68 A resolution

PDB ID 2dsx

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