2efc

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[[Image:2efc.png|left|200px]]
 
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==Ara7-GDP/AtVps9a==
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The line below this paragraph, containing "STRUCTURE_2efc", creates the "Structure Box" on the page.
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<StructureSection load='2efc' size='340' side='right'caption='[[2efc]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2efc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EFC FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene></td></tr>
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{{STRUCTURE_2efc| PDB=2efc | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2efc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2efc OCA], [https://pdbe.org/2efc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2efc RCSB], [https://www.ebi.ac.uk/pdbsum/2efc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2efc ProSAT]</span></td></tr>
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</table>
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===Ara7-GDP/AtVps9a===
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== Function ==
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[https://www.uniprot.org/uniprot/VPS9A_ARATH VPS9A_ARATH] Functions as guanine nucleotide exchange factor (GEF) for Rab small GTPases. Activates specifically RABF1, RABF2A and RABF2B proteins. Required for early stages of embryogenesis, cytokinesis, embryogenesis, and organ development. Is essential for the establishment or maintenance of the polar localization of the auxin efflux carrier PIN1.<ref>PMID:18055610</ref> <ref>PMID:20833725</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_20833725}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 20833725 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/2efc_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_20833725}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[2efc]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EFC OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2efc ConSurf].
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<div style="clear:both"></div>
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==Reference==
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== References ==
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<ref group="xtra">PMID:020833725</ref><references group="xtra"/>
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<references/>
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__TOC__
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</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
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[[Category: Goh, T.]]
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[[Category: Large Structures]]
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[[Category: Ihara, K.]]
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[[Category: Goh T]]
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[[Category: Ito, E.]]
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[[Category: Ihara K]]
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[[Category: Nakano, A.]]
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[[Category: Ito E]]
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[[Category: Sunada, M.]]
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[[Category: Nakano A]]
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[[Category: Ueda, T.]]
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[[Category: Sunada M]]
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[[Category: Uejima, T.]]
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[[Category: Ueda T]]
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[[Category: Wakatsuki, S.]]
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[[Category: Uejima T]]
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[[Category: Gef]]
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[[Category: Wakatsuki S]]
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[[Category: Gtpase]]
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[[Category: Nucleotide]]
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[[Category: Rab5]]
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[[Category: Transport protein]]
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[[Category: Vps9]]
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Current revision

Ara7-GDP/AtVps9a

PDB ID 2efc

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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