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2fuk

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[[Image:2fuk.gif|left|200px]]
 
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==Crystal structure of XC6422 from Xanthomonas campestris: a member of a/b serine hydrolase without lid at 1.6 resolution==
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The line below this paragraph, containing "STRUCTURE_2fuk", creates the "Structure Box" on the page.
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<StructureSection load='2fuk' size='340' side='right'caption='[[2fuk]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2fuk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_campestris Xanthomonas campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FUK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FUK FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fuk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fuk OCA], [https://pdbe.org/2fuk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fuk RCSB], [https://www.ebi.ac.uk/pdbsum/2fuk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fuk ProSAT]</span></td></tr>
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{{STRUCTURE_2fuk| PDB=2fuk | SCENE= }}
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</table>
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== Function ==
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'''Crystal structure of XC6422 from Xanthomonas campestris: a member of a/b serine hydrolase without lid at 1.6 resolution'''
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[https://www.uniprot.org/uniprot/B0RM26_XANCB B0RM26_XANCB]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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==Overview==
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Check<jmol>
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XC6422 is a conserved hypothetical protein from Xanthomonas campestris pathovar campestris (Xcc), a Gram-negative yellow-pigmented pathogenic bacterium that causes black rot, one of the major worldwide diseases of cruciferous crops. The protein consists of 220 amino acids and its structure has been determined to 1.6 A resolution using the multi-wavelength anomalous dispersion (MAD) method. Although it has very low sequence identity to protein sequences in the PDB (less than 20%), the determined structure nevertheless shows that it belongs to the superfamily of serine alpha/beta-hydrolases, with an active site that is fully accessible to solvent owing to the absence of a lid domain. Modelling studies with the serine esterase inhibitor E600 indicate that XC6422 adopts a conserved Ser-His-Asp catalytic triad common to this superfamily and has a preformed oxyanion hole for catalytic activation. These structural features suggest that XC6422 is most likely to be a hydrolase active on a soluble ester or a small lipid. An extra strand preceding the first beta-strand in the canonical alpha/beta-hydrolase fold leads to extensive subunit interactions between XC6422 monomers, which may explain why XC6422 crystals of good diffraction quality can grow to dimensions of up to 1.5 mm in a few days.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fu/2fuk_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FUK OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==Reference==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fuk ConSurf].
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Structure of XC6422 from Xanthomonas campestris at 1.6 A resolution: a small serine alpha/beta-hydrolase., Yang CY, Chin KH, Chou CC, Wang AH, Chou SH, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Jun 1;62(Pt, 6):498-503. Epub 2006 May 31. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16754966 16754966]
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<div style="clear:both"></div>
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[[Category: Chin, K H.]]
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__TOC__
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[[Category: Chou, C C.]]
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</StructureSection>
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[[Category: Chou, S H.]]
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[[Category: Large Structures]]
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[[Category: Wang, A H.J.]]
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[[Category: Xanthomonas campestris]]
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[[Category: Yang, C Y.]]
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[[Category: Chin KH]]
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[[Category: A/b hydrolase]]
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[[Category: Chou CC]]
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[[Category: Structural genomic]]
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[[Category: Chou SH]]
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[[Category: X-ray diffraction]]
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[[Category: Wang AHJ]]
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[[Category: Xanthomonas campestri]]
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[[Category: Yang CY]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 04:19:29 2008''
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Current revision

Crystal structure of XC6422 from Xanthomonas campestris: a member of a/b serine hydrolase without lid at 1.6 resolution

PDB ID 2fuk

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