This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2hyk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:52, 13 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2hyk.png|left|200px]]
 
-
<!--
+
==The crystal structure of an endo-beta-1,3-glucanase from alkaliphilic Nocardiopsis sp.strain F96==
-
The line below this paragraph, containing "STRUCTURE_2hyk", creates the "Structure Box" on the page.
+
<StructureSection load='2hyk' size='340' side='right'caption='[[2hyk]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2hyk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nocardiopsis_sp._F96 Nocardiopsis sp. F96]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HYK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HYK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2hyk| PDB=2hyk | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hyk OCA], [https://pdbe.org/2hyk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hyk RCSB], [https://www.ebi.ac.uk/pdbsum/2hyk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hyk ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2V0H0_9ACTN Q2V0H0_9ACTN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hy/2hyk_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hyk ConSurf].
 +
<div style="clear:both"></div>
-
===The crystal structure of an endo-beta-1,3-glucanase from alkaliphilic Nocardiopsis sp.strain F96===
+
==See Also==
-
 
+
*[[Glucanase 3D structures|Glucanase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2HYK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Nocardiopsis_sp. Nocardiopsis sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HYK OCA].
+
[[Category: Large Structures]]
-
 
+
[[Category: Nocardiopsis sp. F96]]
-
==Reference==
+
[[Category: Fibriansah G]]
-
The 1.3 A crystal structure of a novel endo-beta-1,3-glucanase of glycoside hydrolase family 16 from alkaliphilic Nocardiopsis sp. strain F96., Fibriansah G, Masuda S, Koizumi N, Nakamura S, Kumasaka T, Proteins. 2007 Nov 15;69(3):683-90. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17879342 17879342]
+
[[Category: Kumasaka T]]
-
[[Category: Glucan endo-1,3-beta-D-glucosidase]]
+
[[Category: Nakamura S]]
-
[[Category: Nocardiopsis sp.]]
+
-
[[Category: Single protein]]
+
-
[[Category: Fibriansah, G.]]
+
-
[[Category: Kumasaka, T.]]
+
-
[[Category: Nakamura, S.]]
+
-
[[Category: Bacterial endo-beta-1,3-glucanase]]
+
-
[[Category: Beta-jelly roll]]
+
-
[[Category: Family 16]]
+
-
[[Category: Hydrolase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 11:09:37 2008''
+

Current revision

The crystal structure of an endo-beta-1,3-glucanase from alkaliphilic Nocardiopsis sp.strain F96

PDB ID 2hyk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2hyk"
Personal tools