This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2qhv
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2qhv" size="350" color="white" frame="true" align="right" spinBox="true" caption="2qhv, resolution 1.600Å" /> '''Structural Basis of...) |
|||
| (13 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2qhv.jpg|left|200px]]<br /><applet load="2qhv" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2qhv, resolution 1.600Å" /> | ||
| - | '''Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B'''<br /> | ||
| - | == | + | ==Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B== |
| - | + | <StructureSection load='2qhv' size='340' side='right'caption='[[2qhv]], [[Resolution|resolution]] 1.60Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[2qhv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QHV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QHV FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> | |
| - | [[Category: | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OC9:OCTAN-1-OL'>OC9</scene></td></tr> |
| - | [[Category: Thermus thermophilus]] | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qhv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qhv OCA], [https://pdbe.org/2qhv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qhv RCSB], [https://www.ebi.ac.uk/pdbsum/2qhv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qhv ProSAT]</span></td></tr> |
| - | [[Category: Kim | + | </table> |
| - | [[Category: Kim | + | == Function == |
| - | [[Category: Kim | + | [https://www.uniprot.org/uniprot/LIPB_THET8 LIPB_THET8] Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate (By similarity). |
| - | [[Category: Lee | + | == Evolutionary Conservation == |
| - | [[Category: Lee | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[Category: Suh | + | Check<jmol> |
| - | [[Category: Yoon | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qh/2qhv_consurf.spt"</scriptWhenChecked> | |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | + | </jmolCheckbox> | |
| - | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qhv ConSurf]. | |
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Thermus thermophilus HB8]] | ||
| + | [[Category: Kim DJ]] | ||
| + | [[Category: Kim HS]] | ||
| + | [[Category: Kim KH]] | ||
| + | [[Category: Lee HH]] | ||
| + | [[Category: Lee SJ]] | ||
| + | [[Category: Suh SW]] | ||
| + | [[Category: Yoon HJ]] | ||
Current revision
Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B
| |||||||||||
Categories: Large Structures | Thermus thermophilus HB8 | Kim DJ | Kim HS | Kim KH | Lee HH | Lee SJ | Suh SW | Yoon HJ
