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2yvm
From Proteopedia
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| - | [[Image:2yvm.png|left|200px]] | ||
| - | + | ==Crystal structure of NDX2 in complex with MG2+ from thermus thermophilus HB8== | |
| - | + | <StructureSection load='2yvm' size='340' side='right'caption='[[2yvm]], [[Resolution|resolution]] 1.70Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2yvm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YVM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YVM FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yvm OCA], [https://pdbe.org/2yvm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yvm RCSB], [https://www.ebi.ac.uk/pdbsum/2yvm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yvm ProSAT], [https://www.topsan.org/Proteins/RSGI/2yvm TOPSAN]</span></td></tr> |
| - | [[2yvm]] is a 1 chain structure with sequence from [ | + | </table> |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/Q5SJY9_THET8 Q5SJY9_THET8] | |
| - | < | + | == Evolutionary Conservation == |
| - | [[ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [ | + | Check<jmol> |
| - | [ | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yv/2yvm_consurf.spt"</scriptWhenChecked> | |
| - | [ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[ | + | </jmolCheckbox> |
| - | [ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yvm ConSurf]. |
| - | [[ | + | <div style="clear:both"></div> |
| - | + | __TOC__ | |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Thermus thermophilus HB8]] |
| - | [[Category: | + | [[Category: Kuramitsu S]] |
| - | [[Category: | + | [[Category: Masui R]] |
| - | [[Category: | + | [[Category: Nakagawa N]] |
| - | [[Category: | + | [[Category: Wakamatsu T]] |
| + | [[Category: Yokoyama S]] | ||
Current revision
Crystal structure of NDX2 in complex with MG2+ from thermus thermophilus HB8
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