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2z45

From Proteopedia

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[[Image:2z45.png|left|200px]]
 
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{{STRUCTURE_2z45| PDB=2z45 | SCENE= }}
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==Crystal Structure of Zn-bound ORF134==
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<StructureSection load='2z45' size='340' side='right'caption='[[2z45]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
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===Crystal Structure of Zn-bound ORF134===
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2z45]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_sp._PCC_7002 Synechococcus sp. PCC 7002]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z45 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z45 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
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==About this Structure==
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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[[2z45]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Synechococcus_sp. Synechococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z45 OCA].
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z45 OCA], [https://pdbe.org/2z45 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z45 RCSB], [https://www.ebi.ac.uk/pdbsum/2z45 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z45 ProSAT]</span></td></tr>
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[[Category: Synechococcus sp.]]
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</table>
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[[Category: Ashida, H.]]
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== Function ==
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[[Category: Ihara, K.]]
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[https://www.uniprot.org/uniprot/RBCX_SYNP2 RBCX_SYNP2] An RbcL-specific chaperone. Required for assembly of the RbcL8 core, acting downstream of the major chaperonin (GroEL-GroES). Acts on newly folded RbcL, has a transient dynamic interaction with RbcL and is eventually displaced by RbcS (PubMed:17574029). The central cleft of the RbcX homodimer (RbcX2) binds the C-terminus of an RbcL monomer, stabilizing the C-terminus and probably preventing its reassociation with chaperonin GroEL-ES. At the same time the peripheral region of RbcX2 binds a second RbcL monomer, bridging the RbcL homodimers in the correct orientation. The RbcX2(2)-bound RbcL dimers then assemble into the RbcL8 core (RbcL8-(RbcX2)8). RbcS binding triggers the release of RbcX2 (By similarity). Required for optimal reconstitution of RuBisCO into its RbcL8S8 holoenzyme form upon expression of rbcL-rbcS subunits in E.coli, and probably also in situ. A frameshift mutation that replaces half the protein reduces accumulation of both RbcL and RbcS subunits and halves activity of RuBisCO in situ and in E.coli (PubMed:15564522).[UniProtKB:Q44212]<ref>PMID:15564522</ref> <ref>PMID:17574029</ref>
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[[Category: Kanai, S.]]
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== Evolutionary Conservation ==
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[[Category: Kato, R.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Miyasaka, H.]]
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Check<jmol>
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[[Category: Onizuka, T.]]
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<jmolCheckbox>
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[[Category: Tanaka, S.]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z4/2z45_consurf.spt"</scriptWhenChecked>
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[[Category: Tomimoto, Y.]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Wakatsuki, S.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Yamada, Y.]]
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</jmolCheckbox>
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[[Category: Yokota, A.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z45 ConSurf].
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[[Category: Chaperone]]
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<div style="clear:both"></div>
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[[Category: Helix bundle]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Synechococcus sp. PCC 7002]]
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[[Category: Ashida H]]
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[[Category: Ihara K]]
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[[Category: Kanai S]]
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[[Category: Kato R]]
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[[Category: Miyasaka H]]
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[[Category: Onizuka T]]
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[[Category: Tanaka S]]
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[[Category: Tomimoto Y]]
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[[Category: Wakatsuki S]]
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[[Category: Yamada Y]]
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[[Category: Yokota A]]

Current revision

Crystal Structure of Zn-bound ORF134

PDB ID 2z45

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