This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2zqm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:58, 13 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2zqm.png|left|200px]]
 
-
<!--
+
==Crystal structure of the prefoldin beta subunit from Thermococcus strain KS-1==
-
The line below this paragraph, containing "STRUCTURE_2zqm", creates the "Structure Box" on the page.
+
<StructureSection load='2zqm' size='340' side='right'caption='[[2zqm]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2zqm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_sp._JCM_11816 Thermococcus sp. JCM 11816]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZQM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZQM FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
{{STRUCTURE_2zqm| PDB=2zqm | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zqm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zqm OCA], [https://pdbe.org/2zqm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zqm RCSB], [https://www.ebi.ac.uk/pdbsum/2zqm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zqm ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the prefoldin beta subunit from Thermococcus strain KS-1===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/B0I3E0_THEK1 B0I3E0_THEK1] Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding (By similarity).[HAMAP-Rule:MF_00307]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_18775436}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18775436 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zq/2zqm_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_18775436}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2ZQM is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermococcus_sp. Thermococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZQM OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zqm ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:18775436</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Thermococcus sp.]]
+
[[Category: Large Structures]]
-
[[Category: Kida, H.]]
+
[[Category: Thermococcus sp. JCM 11816]]
-
[[Category: Miki, K.]]
+
[[Category: Kida H]]
-
[[Category: Chaperone]]
+
[[Category: Miki K]]
-
[[Category: Prefoldin]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 23:33:01 2009''
+

Current revision

Crystal structure of the prefoldin beta subunit from Thermococcus strain KS-1

PDB ID 2zqm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools