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6md3

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==Structure of T. brucei RRP44 PIN domain==
==Structure of T. brucei RRP44 PIN domain==
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<StructureSection load='6md3' size='340' side='right' caption='[[6md3]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
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<StructureSection load='6md3' size='340' side='right'caption='[[6md3]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6md3]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_(trypanozoon)_brucei Trypanosoma (trypanozoon) brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MD3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6MD3 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6md3]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MD3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6MD3 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.29&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RRP44 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5691 Trypanosoma (Trypanozoon) brucei])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6md3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6md3 OCA], [http://pdbe.org/6md3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6md3 RCSB], [http://www.ebi.ac.uk/pdbsum/6md3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6md3 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6md3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6md3 OCA], [https://pdbe.org/6md3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6md3 RCSB], [https://www.ebi.ac.uk/pdbsum/6md3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6md3 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/Q95Z12_9TRYP Q95Z12_9TRYP]
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Ribosomal RNA precursors undergo a series of structural and chemical modifications to generate matured RNA molecules that will comprise ribosomes. This maturation process involves a large set of accessory proteins as well as ribonucleases, responsible for removal of the external and internal transcribed spacers from the pre-rRNA. Early-diverging eukaryotes belonging to the Kinetoplastida class display several unique characteristics, in particular in terms of RNA synthesis and maturation. These peculiarities include the rRNA biogenesis and the extensive fragmentation of the large ribosomal subunit (LSU) rRNA. The role of specific endo- and exonucleases in the maturation of the unusual rRNA precursor of trypanosomatids remains largely unknown. One of the nucleases involved in rRNA processing is Rrp44, an exosome associated ribonuclease in yeast, which is involved in several metabolic RNA pathways. Here, we investigated the function of Trypanosoma brucei RRP44 orthologue (TbRRP44) in rRNA processing. Our results revealed that TbRRP44 depletion causes unusual polysome profile and accumulation of the complete LSU rRNA precursor, in addition to 5.8S maturation impairment. We also determined the crystal structure of TbRRP44 endonucleolytic domain. Structural comparison with Saccharomyces cerevisiae Rrp44 revealed differences in the catalytic site and substitutions of surface residues, which could provide molecular bases for the lack of interaction of RRP44 with the exosome complex in T. brucei.
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Trypanosoma brucei RRP44 is involved in an early stage of large ribosomal subunit RNA maturation.,Cesaro G, Carneiro FRG, Avila AR, Zanchin NIT, Guimaraes BG RNA Biol. 2018 Dec 28. doi: 10.1080/15476286.2018.1564463. PMID:30593255<ref>PMID:30593255</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6md3" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Cesaro, G]]
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[[Category: Large Structures]]
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[[Category: Guimaraes, B G]]
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[[Category: Trypanosoma brucei]]
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[[Category: Hydrolase-rna complex]]
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[[Category: Cesaro G]]
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[[Category: Pin domain]]
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[[Category: Guimaraes BG]]
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[[Category: Ribonuclease]]
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[[Category: Rrna processing]]
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[[Category: Rrp44]]
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Current revision

Structure of T. brucei RRP44 PIN domain

PDB ID 6md3

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