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6nod

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(New page: ==Crystal structure of C. elegans PUF-8 in complex with RNA== <StructureSection load='6nod' size='340' side='right' caption='6nod, resolution 2.55&Aring;' scene=''> == ...)
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==Crystal structure of C. elegans PUF-8 in complex with RNA==
==Crystal structure of C. elegans PUF-8 in complex with RNA==
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<StructureSection load='6nod' size='340' side='right' caption='[[6nod]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
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<StructureSection load='6nod' size='340' side='right'caption='[[6nod]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6nod]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NOD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NOD FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6nod]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NOD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NOD FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6noc|6noc]]</td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.547&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nod FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nod OCA], [http://pdbe.org/6nod PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nod RCSB], [http://www.ebi.ac.uk/pdbsum/6nod PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nod ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nod FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nod OCA], [https://pdbe.org/6nod PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nod RCSB], [https://www.ebi.ac.uk/pdbsum/6nod PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nod ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/Q09487_CAEEL Q09487_CAEEL]
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PUF (PUmilio/FBF) RNA-binding proteins recognize distinct elements. In C. elegans, PUF-8 binds to an 8-nt motif and restricts proliferation in the germline. Conversely, FBF-2 recognizes a 9-nt element and promotes mitosis. To understand how motif divergence relates to biological function, we first determined a crystal structure of PUF-8. Comparison of this structure to that of FBF-2 revealed a major difference in a central repeat. We devised a modified yeast 3-hybrid screen to identify mutations that confer recognition of an 8-nt element to FBF-2. We identified several such mutants and validated structurally and biochemically their binding to 8-nt RNA elements. Using genome engineering, we generated a mutant animal with a substitution in FBF-2 that confers preferential binding to the PUF-8 element. The mutant largely rescued overproliferation in animals that spontaneously generate tumors in the absence of puf-8. This work highlights the critical role of motif length in the specification of biological function.
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Engineering a conserved RNA regulatory protein repurposes its biological function in vivo.,Bhat VD, McCann KL, Wang Y, Fonseca DR, Shukla T, Alexander JC, Qiu C, Wickens M, Lo TW, Tanaka Hall TM, Campbell ZT Elife. 2019 Jan 17;8. pii: 43788. doi: 10.7554/eLife.43788. PMID:30652968<ref>PMID:30652968</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6nod" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Hall, T M.T]]
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[[Category: Caenorhabditis elegans]]
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[[Category: McCann, K L]]
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[[Category: Large Structures]]
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[[Category: Qiu, C]]
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[[Category: Hall TMT]]
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[[Category: Wang, Y]]
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[[Category: McCann KL]]
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[[Category: Pum repeat protein]]
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[[Category: Qiu C]]
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[[Category: Rna binding protein]]
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[[Category: Wang Y]]
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[[Category: Rna binding protein-rna complex]]
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Current revision

Crystal structure of C. elegans PUF-8 in complex with RNA

PDB ID 6nod

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