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6u4b

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Current revision (14:56, 13 March 2024) (edit) (undo)
 
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<StructureSection load='6u4b' size='340' side='right'caption='[[6u4b]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='6u4b' size='340' side='right'caption='[[6u4b]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6u4b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pneumoniae"_(schroeter_1886)_flugge_1886 "bacillus pneumoniae" (schroeter 1886) flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6U4B OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6U4B FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6u4b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6U4B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6U4B FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">wbbM ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=573 "Bacillus pneumoniae" (Schroeter 1886) Flugge 1886])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6u4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6u4b OCA], [http://pdbe.org/6u4b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6u4b RCSB], [http://www.ebi.ac.uk/pdbsum/6u4b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6u4b ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6u4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6u4b OCA], [https://pdbe.org/6u4b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6u4b RCSB], [https://www.ebi.ac.uk/pdbsum/6u4b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6u4b ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/Q48484_KLEPN Q48484_KLEPN]
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Lipopolysaccharide O-antigen is an attractive candidate for immunotherapeutic strategies targeting antibiotic-resistant Klebsiella pneumoniae. Several K. pneumoniae O-serotypes are based on a shared O2a-antigen backbone repeating unit: (--&gt; 3)-alpha-Galp-(1 --&gt; 3)-beta-Galf-(1 --&gt;). O2a antigen is synthesized on undecaprenol diphosphate in a pathway involving the O2a polymerase, WbbM, before its export by an ATP-binding cassette transporter. This dual domain polymerase possesses a C-terminal galactopyranosyltransferase resembling known GT8 family enzymes, and an N-terminal DUF4422 domain identified here as a galactofuranosyltransferase defining a previously unrecognized family (GT111). Functional assignment of DUF4422 explains how galactofuranose is incorporated into various polysaccharides of importance in vaccine production and the food industry. In the 2.1-A resolution structure, three WbbM protomers associate to form a flattened triangular prism connected to a central stalk that orients the active sites toward the membrane. The biochemical, structural and topological properties of WbbM offer broader insight into the mechanisms of assembly of bacterial cell-surface glycans.
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A bifunctional O-antigen polymerase structure reveals a new glycosyltransferase family.,Clarke BR, Ovchinnikova OG, Sweeney RP, Kamski-Hennekam ER, Gitalis R, Mallette E, Kelly SD, Lowary TL, Kimber MS, Whitfield C Nat Chem Biol. 2020 Apr;16(4):450-457. doi: 10.1038/s41589-020-0494-0. Epub 2020 , Mar 9. PMID:32152541<ref>PMID:32152541</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6u4b" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Klebsiella pneumoniae]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Gitalis, R]]
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[[Category: Gitalis R]]
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[[Category: Kamski-Hennekam, E R]]
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[[Category: Kamski-Hennekam ER]]
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[[Category: Kimber, M S]]
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[[Category: Kimber MS]]
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[[Category: Mallette, E]]
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[[Category: Mallette E]]
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[[Category: Bifunctional]]
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[[Category: Duf4422]]
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[[Category: Glycsoyltransferase]]
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[[Category: Transferase]]
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[[Category: Trimeric]]
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[[Category: Wbbm]]
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Current revision

WbbM bifunctional glycosytransferase apo structure

PDB ID 6u4b

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