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1aam

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(New page: 200px<br /><applet load="1aam" size="450" color="white" frame="true" align="right" spinBox="true" caption="1aam, resolution 2.8&Aring;" /> '''THE STRUCTURAL BASIS ...)
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[[Image:1aam.jpg|left|200px]]<br /><applet load="1aam" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1aam, resolution 2.8&Aring;" />
 
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'''THE STRUCTURAL BASIS FOR THE ALTERED SUBSTRATE SPECIFICITY OF THE R292D ACTIVE SITE MUTANT OF ASPARTATE AMINOTRANSFERASE FROM E. COLI'''<br />
 
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==Overview==
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==THE STRUCTURAL BASIS FOR THE ALTERED SUBSTRATE SPECIFICITY OF THE R292D ACTIVE SITE MUTANT OF ASPARTATE AMINOTRANSFERASE FROM E. COLI==
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Two refined crystal structures of aspartate aminotransferase from E. coli, are reported. The wild type enzyme is in the pyridoxal phosphate (PLP), form and its structure has been determined to 2.4 A resolution, refined to, an R-factor of 23.2%. The structure of the Arg292Asp mutant has been, determined at 2.8 A resolution, refined to an R-factor of 20.3%. The wild, type and mutant crystals are isomorphous and the two structures are very, similar, with only minor changes in positions of important active site, residues. As residue Arg292 is primarily responsible for the substrate, charge specificity in the wild type enzyme, the mutant containing a charge, reversal at this position might be expected to catalyze transamination of, arginine as efficiently as the wild type enzyme effects transamination of, aspartate [Cronin, C.N. and Kirsch, J.F. (1988) Biochemistry, 27, 4572-4579]. This mutant does in fact prefer arginine over aspartate as a, substrate, however, the rate of catalysis is much slower than that of the, wild type enzyme with its physiological substrate, aspartate. A comparison, of these two structures indicates that the poorer catalytic efficiency of, R292D, when presented with arginine, is not due to a gross conformational, difference, but is rather a consequence of both small side chain and main, chain reorientations and the pre-existing active site polar environment, which greatly favors the wild type ion pair interaction.
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<StructureSection load='1aam' size='340' side='right'caption='[[1aam]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1aam]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AAM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AAM FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1aam FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1aam OCA], [https://pdbe.org/1aam PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1aam RCSB], [https://www.ebi.ac.uk/pdbsum/1aam PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1aam ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AAT_ECOLI AAT_ECOLI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aa/1aam_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1aam ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1AAM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with SO4 and PLP as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1AAM OCA].
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*[[Aspartate aminotransferase 3D structures|Aspartate aminotransferase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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The structural basis for the altered substrate specificity of the R292D active site mutant of aspartate aminotransferase from E. coli., Almo SC, Smith DL, Danishefsky AT, Ringe D, Protein Eng. 1994 Mar;7(3):405-12. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=7909946 7909946]
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[[Category: Aspartate transaminase]]
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Almo, S.C.]]
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[[Category: Almo SC]]
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[[Category: Danishefsky, A.T.]]
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[[Category: Danishefsky AT]]
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[[Category: Ringe, D.]]
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[[Category: Ringe D]]
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[[Category: Smith, D.L.]]
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[[Category: Smith DL]]
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[[Category: PLP]]
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[[Category: SO4]]
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[[Category: aminotransferase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 10:43:11 2007''
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Current revision

THE STRUCTURAL BASIS FOR THE ALTERED SUBSTRATE SPECIFICITY OF THE R292D ACTIVE SITE MUTANT OF ASPARTATE AMINOTRANSFERASE FROM E. COLI

PDB ID 1aam

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