This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1aaz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:22, 13 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1aaz.png|left|200px]]
 
-
<!--
+
==THE STRUCTURE OF OXIDIZED BACTERIOPHAGE T4 GLUTAREDOXIN (THIOREDOXIN)==
-
The line below this paragraph, containing "STRUCTURE_1aaz", creates the "Structure Box" on the page.
+
<StructureSection load='1aaz' size='340' side='right'caption='[[1aaz]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1aaz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AAZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AAZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
-
{{STRUCTURE_1aaz| PDB=1aaz | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1aaz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1aaz OCA], [https://pdbe.org/1aaz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1aaz RCSB], [https://www.ebi.ac.uk/pdbsum/1aaz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1aaz ProSAT]</span></td></tr>
-
 
+
</table>
-
===THE STRUCTURE OF OXIDIZED BACTERIOPHAGE T4 GLUTAREDOXIN (THIOREDOXIN)===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/GLRX_BPT4 GLRX_BPT4] Serves as a reducing agent for the phage-induced ribonucleotide reductase, but not for the bacterial ones. This specificity may be the result of sequence differences around the redox-active disulfide bond. The oxidized form accepts electrons from bacterial glutathione and will, in turn, reduce other small disulfides. Can also be reduced by NADPH and by bacterial thioredoxin reductase.<ref>PMID:8440680</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_1453466}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 1453466 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aa/1aaz_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_1453466}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[1aaz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AAZ OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1aaz ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
<ref group="xtra">PMID:001453466</ref><ref group="xtra">PMID:009099998</ref><references group="xtra"/>
+
<references/>
-
[[Category: Enterobacteria phage t4]]
+
__TOC__
-
[[Category: Eklund, H.]]
+
</StructureSection>
-
[[Category: Ingelman, M.]]
+
[[Category: Escherichia virus T4]]
-
[[Category: Joelson, T.]]
+
[[Category: Large Structures]]
-
[[Category: Nikkola, M.]]
+
[[Category: Eklund H]]
-
[[Category: Nordlund, P.]]
+
[[Category: Ingelman M]]
-
[[Category: Petratos, K.]]
+
[[Category: Joelson T]]
-
[[Category: Soderberg, B O.]]
+
[[Category: Nikkola M]]
-
[[Category: Sonnerstam, U.]]
+
[[Category: Nordlund P]]
-
[[Category: Uhlin, T.]]
+
[[Category: Petratos K]]
-
[[Category: Electron transport]]
+
[[Category: Soderberg B-O]]
 +
[[Category: Sonnerstam U]]
 +
[[Category: Uhlin T]]

Current revision

THE STRUCTURE OF OXIDIZED BACTERIOPHAGE T4 GLUTAREDOXIN (THIOREDOXIN)

PDB ID 1aaz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1aaz"
Personal tools