This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1aq5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:27, 13 March 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1aq5.png|left|200px]]
 
-
<!--
+
==HIGH-RESOLUTION SOLUTION NMR STRUCTURE OF THE TRIMERIC COILED-COIL DOMAIN OF CHICKEN CARTILAGE MATRIX PROTEIN, 20 STRUCTURES==
-
The line below this paragraph, containing "STRUCTURE_1aq5", creates the "Structure Box" on the page.
+
<StructureSection load='1aq5' size='340' side='right'caption='[[1aq5]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1aq5]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AQ5 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1aq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1aq5 OCA], [https://pdbe.org/1aq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1aq5 RCSB], [https://www.ebi.ac.uk/pdbsum/1aq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1aq5 ProSAT]</span></td></tr>
-
{{STRUCTURE_1aq5| PDB=1aq5 | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===HIGH-RESOLUTION SOLUTION NMR STRUCTURE OF THE TRIMERIC COILED-COIL DOMAIN OF CHICKEN CARTILAGE MATRIX PROTEIN, 20 STRUCTURES===
+
[https://www.uniprot.org/uniprot/MATN1_CHICK MATN1_CHICK] Cartilage matrix protein is a major component of the extracellular matrix of non-articular cartilage. It binds to collagen.
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_9260286}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 9260286 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aq/1aq5_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_9260286}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1aq5 ConSurf].
-
1AQ5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AQ5 OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
Heteronuclear NMR assignments and secondary structure of the coiled coil trimerization domain from cartilage matrix protein in oxidized and reduced forms., Wiltscheck R, Kammerer RA, Dames SA, Schulthess T, Blommers MJ, Engel J, Alexandrescu AT, Protein Sci. 1997 Aug;6(8):1734-45. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9260286 9260286]
+
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Alexandrescu, A T.]]
+
[[Category: Alexandrescu AT]]
-
[[Category: Dames, S A.]]
+
[[Category: Dames SA]]
-
[[Category: Engel, J.]]
+
[[Category: Engel J]]
-
[[Category: Kammerer, R A.]]
+
[[Category: Kammerer RA]]
-
[[Category: Wiltscheck, R.]]
+
[[Category: Wiltscheck R]]
-
[[Category: Cartilage matrix protein]]
+
-
[[Category: Coiled-coil]]
+
-
[[Category: Heptad repeat]]
+
-
[[Category: Interchain disulfide bond]]
+
-
[[Category: Matrilin-1]]
+
-
[[Category: Noncollagenous extracellular protein]]
+
-
[[Category: Oligomerization domain]]
+
-
[[Category: Trimer]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 17:23:38 2008''
+

Current revision

HIGH-RESOLUTION SOLUTION NMR STRUCTURE OF THE TRIMERIC COILED-COIL DOMAIN OF CHICKEN CARTILAGE MATRIX PROTEIN, 20 STRUCTURES

PDB ID 1aq5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1aq5"
Personal tools