This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1cgo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:40, 13 March 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1cgo.png|left|200px]]
 
-
<!--
+
==CYTOCHROME C'==
-
The line below this paragraph, containing "STRUCTURE_1cgo", creates the "Structure Box" on the page.
+
<StructureSection load='1cgo' size='340' side='right'caption='[[1cgo]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1cgo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Alcaligenes_sp. Alcaligenes sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CGO FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-
{{STRUCTURE_1cgo| PDB=1cgo | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cgo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgo OCA], [https://pdbe.org/1cgo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cgo RCSB], [https://www.ebi.ac.uk/pdbsum/1cgo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cgo ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CYCP_ALCXX CYCP_ALCXX] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cg/1cgo_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cgo ConSurf].
 +
<div style="clear:both"></div>
-
===CYTOCHROME C'===
+
==See Also==
-
 
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15299707}}, adds the Publication Abstract to the page
+
[[Category: Alcaligenes sp]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15299707 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Anderson BF]]
-
{{ABSTRACT_PUBMED_15299707}}
+
[[Category: Baker EN]]
-
 
+
[[Category: Dobbs AJ]]
-
==About this Structure==
+
[[Category: Faber HR]]
-
1CGO is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Alcaligenes_sp. Alcaligenes sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGO OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:15299707</ref><references group="xtra"/>
+
-
[[Category: Alcaligenes sp.]]
+
-
[[Category: Anderson, B F.]]
+
-
[[Category: Baker, E N.]]
+
-
[[Category: Dobbs, A J.]]
+
-
[[Category: Faber, H R.]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 11:27:36 2009''
+

Current revision

CYTOCHROME C'

PDB ID 1cgo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools