This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1crx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:42, 13 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1crx.png|left|200px]]
 
-
<!--
+
==CRE RECOMBINASE/DNA COMPLEX REACTION INTERMEDIATE I==
-
The line below this paragraph, containing "STRUCTURE_1crx", creates the "Structure Box" on the page.
+
<StructureSection load='1crx' size='340' side='right'caption='[[1crx]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1crx]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_P1 Escherichia virus P1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CRX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CRX FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_1crx| PDB=1crx | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1crx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1crx OCA], [https://pdbe.org/1crx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1crx RCSB], [https://www.ebi.ac.uk/pdbsum/1crx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1crx ProSAT]</span></td></tr>
-
 
+
</table>
-
===CRE RECOMBINASE/DNA COMPLEX REACTION INTERMEDIATE I===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/RECR_BPP1 RECR_BPP1] Catalyzes site-specific recombination between two 34-base-pair LOXP sites. Its role is to maintain the phage genome as a monomeric unit-copy plasmid in the lysogenic state.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_9288963}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 9288963 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cr/1crx_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_9288963}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[1crx]] is a 6 chain structure of [[Resolvase]] with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p1 Enterobacteria phage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CRX OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1crx ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Resolvase]]
+
*[[Resolvase 3D structures|Resolvase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:9288963</ref><references group="xtra"/>
+
[[Category: Escherichia virus P1]]
-
[[Category: Enterobacteria phage p1]]
+
[[Category: Large Structures]]
-
[[Category: Duyne, G D.Van.]]
+
[[Category: Gopaul DN]]
-
[[Category: Gopaul, D N.]]
+
[[Category: Guo F]]
-
[[Category: Guo, F.]]
+
[[Category: Van Duyne GD]]
-
[[Category: Protein:dna complex]]
+
-
[[Category: Reaction intermediate]]
+
-
[[Category: Replication/dna complex]]
+
-
[[Category: Site-specific recombinase]]
+

Current revision

CRE RECOMBINASE/DNA COMPLEX REACTION INTERMEDIATE I

PDB ID 1crx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools