This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1czw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:45, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1czw.png|left|200px]]
 
-
{{STRUCTURE_1czw| PDB=1czw | SCENE= }}
+
==STRUCTURE OF THE W34A MUTANT OF SHIGA-LIKE TOXIN I B SUBUNIT==
-
 
+
<StructureSection load='1czw' size='340' side='right'caption='[[1czw]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
===STRUCTURE OF THE W34A MUTANT OF SHIGA-LIKE TOXIN I B SUBUNIT===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1czw]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Phage_h30 Phage h30]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CZW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CZW FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1czw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1czw OCA], [https://pdbe.org/1czw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1czw RCSB], [https://www.ebi.ac.uk/pdbsum/1czw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1czw ProSAT]</span></td></tr>
-
[[1czw]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Phage_h30 Phage h30]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CZW OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/STXB_BPH19 STXB_BPH19] The B subunit is responsible for the binding of the holotoxin to specific receptors on the target cell surface, such as globotriaosylceramide (Gb3) in human intestinal microvilli.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cz/1czw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1czw ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Shiga toxin|Shiga toxin]]
+
*[[Shiga toxin 3D structures|Shiga toxin 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Phage h30]]
[[Category: Phage h30]]
-
[[Category: Boodhoo, A.]]
+
[[Category: Boodhoo A]]
-
[[Category: Brunton, J L.]]
+
[[Category: Brunton JL]]
-
[[Category: Ling, H.]]
+
[[Category: Ling H]]
-
[[Category: Read, R J.]]
+
[[Category: Read RJ]]
-
[[Category: Bacterial toxin]]
+
-
[[Category: Ob-fold]]
+
-
[[Category: Protein-carbohydrate recognition]]
+
-
[[Category: Sugar receptor binding domain]]
+
-
[[Category: Toxin]]
+

Current revision

STRUCTURE OF THE W34A MUTANT OF SHIGA-LIKE TOXIN I B SUBUNIT

PDB ID 1czw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools