This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1d7c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:46, 13 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1d7c.png|left|200px]]
 
-
<!--
+
==CYTOCHROME DOMAIN OF CELLOBIOSE DEHYDROGENASE, PH 4.6==
-
The line below this paragraph, containing "STRUCTURE_1d7c", creates the "Structure Box" on the page.
+
<StructureSection load='1d7c' size='340' side='right'caption='[[1d7c]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1d7c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Phanerodontia_chrysosporium Phanerodontia chrysosporium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D7C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1D7C FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL'>1PG</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-
{{STRUCTURE_1d7c| PDB=1d7c | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1d7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1d7c OCA], [https://pdbe.org/1d7c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1d7c RCSB], [https://www.ebi.ac.uk/pdbsum/1d7c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1d7c ProSAT]</span></td></tr>
-
 
+
</table>
-
===CYTOCHROME DOMAIN OF CELLOBIOSE DEHYDROGENASE, PH 4.6===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/CDH_PHACH CDH_PHACH] Degrades both lignin and cellulose. Oxidizes cellobiose to cellobionolactone.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_10673428}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 10673428 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/1d7c_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_10673428}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1D7C is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Phanerochaete_chrysosporium Phanerochaete chrysosporium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D7C OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1d7c ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
A new scaffold for binding haem in the cytochrome domain of the extracellular flavocytochrome cellobiose dehydrogenase., Hallberg BM, Bergfors T, Backbro K, Pettersson G, Henriksson G, Divne C, Structure. 2000 Jan 15;8(1):79-88. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10673428 10673428]
+
</StructureSection>
-
[[Category: Deleted entry]]
+
[[Category: Large Structures]]
-
[[Category: Phanerochaete chrysosporium]]
+
[[Category: Phanerodontia chrysosporium]]
-
[[Category: Single protein]]
+
[[Category: Backbro K]]
-
[[Category: Backbro, K.]]
+
[[Category: Bergfors T]]
-
[[Category: Bergfors, T.]]
+
[[Category: Divne C]]
-
[[Category: Divne, C.]]
+
[[Category: Hallberg BM]]
-
[[Category: Hallberg, B M.]]
+
-
[[Category: B-type cytochrome]]
+
-
[[Category: Beta sandwich]]
+
-
[[Category: Met/his ligation]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 22:35:57 2008''
+

Current revision

CYTOCHROME DOMAIN OF CELLOBIOSE DEHYDROGENASE, PH 4.6

PDB ID 1d7c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1d7c"
Personal tools