This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3qi5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:46, 14 March 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3qi5.png|left|200px]]
 
-
<!--
+
==Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA==
-
The line below this paragraph, containing "STRUCTURE_3qi5", creates the "Structure Box" on the page.
+
<StructureSection load='3qi5' size='340' side='right'caption='[[3qi5]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3qi5]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QI5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QI5 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDC:N3,N4-ETHENO-2-DEOXYCYTIDINE-5-MONOPHOSPHATE'>EDC</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
{{STRUCTURE_3qi5| PDB=3qi5 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qi5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qi5 OCA], [https://pdbe.org/3qi5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qi5 RCSB], [https://www.ebi.ac.uk/pdbsum/3qi5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qi5 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/3MG_HUMAN 3MG_HUMAN] Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, and 7-methylguanine from the damaged DNA polymer formed by alkylation lesions.
-
 
+
-
<!--
+
-
The line below this paragraph, {{ABSTRACT_PUBMED_21349833}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 21349833 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_21349833}}
+
-
 
+
-
==About this Structure==
+
-
[[3qi5]] is a 6 chain structure of [[DNA glycosylate]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QI5 OCA].
+
==See Also==
==See Also==
-
*[[DNA glycosylate]]
+
*[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:021349833</ref><references group="xtra"/>
+
-
[[Category: DNA-3-methyladenine glycosylase II]]
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Davis, C A.]]
+
[[Category: Large Structures]]
-
[[Category: Drennan, C L.]]
+
[[Category: Davis CA]]
-
[[Category: Lingaraju, G M.]]
+
[[Category: Drennan CL]]
-
[[Category: Samson, L D.]]
+
[[Category: Lingaraju GM]]
-
[[Category: Setser, J W.]]
+
[[Category: Samson LD]]
-
[[Category: Aag]]
+
[[Category: Setser JW]]
-
[[Category: Alkyladenine dna glycosylase fold]]
+
-
[[Category: Dna binding]]
+
-
[[Category: Dna repair]]
+
-
[[Category: Excision]]
+
-
[[Category: Hydrolase-dna complex]]
+
-
[[Category: Nucleus]]
+

Current revision

Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA

PDB ID 3qi5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools