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3r6u

From Proteopedia

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Current revision (12:12, 14 March 2024) (edit) (undo)
 
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<StructureSection load='3r6u' size='340' side='right'caption='[[3r6u]], [[Resolution|resolution]] 1.61&Aring;' scene=''>
<StructureSection load='3r6u' size='340' side='right'caption='[[3r6u]], [[Resolution|resolution]] 1.61&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3r6u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R6U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R6U FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3r6u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._JH642 Bacillus subtilis subsp. subtilis str. JH642]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R6U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R6U FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CHT:CHOLINE+ION'>CHT</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.61&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2b4l|2b4l]], [[1sw2|1sw2]]</div></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CHT:CHOLINE+ION'>CHT</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r6u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r6u OCA], [https://pdbe.org/3r6u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r6u RCSB], [https://www.ebi.ac.uk/pdbsum/3r6u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r6u ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r6u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r6u OCA], [https://pdbe.org/3r6u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r6u RCSB], [https://www.ebi.ac.uk/pdbsum/3r6u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r6u ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/OPUBC_BACSU OPUBC_BACSU]] Member of a high affinity multicomponent binding-protein-dependent transport system for choline.<ref>PMID:10216873</ref>
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[https://www.uniprot.org/uniprot/OPUBC_BACSU OPUBC_BACSU] Member of a high affinity multicomponent binding-protein-dependent transport system for choline.<ref>PMID:10216873</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Bacillus subtilis can synthesize the compatible solute glycine betaine as an osmoprotectant from an exogenous supply of the precursor choline. Import of choline is mediated by two osmotically inducible ABC transport systems: OpuB and OpuC. OpuC catalyzes the import of various osmoprotectants, whereas OpuB is highly specific for choline. OpuBC is the substrate-binding protein of the OpuB transporter, and we have analyzed the affinity of the OpuBC/choline complex by intrinsic tryptophan fluorescence and determined a K(d) value of about 30 muM. The X-ray crystal structure of the OpuBC/choline complex was solved at a resolution of 1.6 A and revealed a fold typical of class II substrate-binding proteins. The positively charged trimethylammonium head group of choline is wedged into an aromatic cage formed by four tyrosine residues and is bound via cation-pi interactions. The hydroxyl group of choline protrudes out of this aromatic cage and makes a single interaction with residue Gln19. The substitution of this residue by Ala decreases choline binding affinity by approximately 15-fold. A water network stabilizes choline within its substrate-binding site and promotes indirect interactions between the two lobes of the OpuBC protein. Disruption of this intricate water network by site-directed mutagenesis of selected residues in OpuBC either strongly reduces choline binding affinity (between 18-fold and 25-fold) or abrogates ligand binding. The crystal structure of the OpuBC/choline complex provides a rational for the observed choline specificity of the OpuB ABC importer in vivo and explains its inability to catalyze the import of glycine betaine into osmotically stressed B. subtilis cells.
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The Crystal Structure of the Substrate-Binding Protein OpuBC from Bacillus subtilis in Complex with Choline.,Pittelkow M, Tschapek B, Smits SH, Schmitt L, Bremer E J Mol Biol. 2011 Jun 1. PMID:21658392<ref>PMID:21658392</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3r6u" style="background-color:#fffaf0;"></div>
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==See Also==
==See Also==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacillus subtilis]]
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[[Category: Bacillus subtilis subsp. subtilis str. JH642]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Bremer, E]]
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[[Category: Bremer E]]
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[[Category: Pittelkow, M]]
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[[Category: Pittelkow M]]
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[[Category: Schmitt, L]]
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[[Category: Schmitt L]]
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[[Category: Smits, S H.J]]
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[[Category: Smits SHJ]]
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[[Category: Tschapek, B]]
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[[Category: Tschapek B]]
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[[Category: Abc-transporter]]
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[[Category: Choline]]
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[[Category: Choline binding]]
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[[Category: Extracellular]]
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[[Category: Substrate binding protein]]
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[[Category: Transport protein]]
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Current revision

Crystal structure of choline binding protein OpuBC from Bacillus subtilis

PDB ID 3r6u

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