This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3t2z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:15, 14 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3t2z.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of sulfide:quinone oxidoreductase from Acidithiobacillus ferrooxidans==
-
The line below this paragraph, containing "STRUCTURE_3t2z", creates the "Structure Box" on the page.
+
<StructureSection load='3t2z' size='340' side='right'caption='[[3t2z]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3t2z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acidithiobacillus_ferrooxidans_ATCC_23270 Acidithiobacillus ferrooxidans ATCC 23270]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3kpi 3kpi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T2Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T2Z FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2994&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BU2:1,3-BUTANEDIOL'>BU2</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=H2S:HYDROSULFURIC+ACID'>H2S</scene>, <scene name='pdbligand=S3H:TRISULFANE'>S3H</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3t2z| PDB=3t2z | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t2z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t2z OCA], [https://pdbe.org/3t2z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t2z RCSB], [https://www.ebi.ac.uk/pdbsum/3t2z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t2z ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SQRD_ACIF2 SQRD_ACIF2] Catalyzes the oxidation of hydrogen sulfide, with the help of a quinone. Consecutive reaction cycles lead to the accumulation of a polysulfide product on the active site Cys residues; these products are released when they exceed a critical length, typically as cyclooctasulfur.<ref>PMID:20303979</ref> <ref>PMID:22542586</ref>
-
===Crystal structure of sulfide:quinone oxidoreductase from Acidithiobacillus ferrooxidans===
+
==See Also==
-
 
+
*[[Quinone reductase 3D structures|Quinone reductase 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_20303979}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 20303979 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Acidithiobacillus ferrooxidans ATCC 23270]]
-
{{ABSTRACT_PUBMED_20303979}}
+
[[Category: Large Structures]]
-
 
+
[[Category: Cherney MM]]
-
==About this Structure==
+
[[Category: James MN]]
-
[[3t2z]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acidithiobacillus_ferrooxidans Acidithiobacillus ferrooxidans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3kpi 3kpi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T2Z OCA].
+
[[Category: Solomonson M]]
-
 
+
[[Category: Weiner JH]]
-
==Reference==
+
[[Category: Zhang Y]]
-
<ref group="xtra">PMID:020303979</ref><references group="xtra"/>
+
-
[[Category: Acidithiobacillus ferrooxidans]]
+
-
[[Category: Cherney, M M.]]
+
-
[[Category: James, M N.]]
+
-
[[Category: Solomonson, M.]]
+
-
[[Category: Weiner, J H.]]
+
-
[[Category: Zhang, Y.]]
+
-
[[Category: Acidithiobacillus ferrooxidan]]
+
-
[[Category: Integral monotopic membrane protein]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Sulfide:quinone oxidoreductase]]
+

Current revision

Crystal structure of sulfide:quinone oxidoreductase from Acidithiobacillus ferrooxidans

PDB ID 3t2z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools