This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3t60

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:18, 14 March 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3t60' size='340' side='right'caption='[[3t60]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='3t60' size='340' side='right'caption='[[3t60]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3t60]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Plaf7 Plaf7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T60 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T60 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3t60]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_3D7 Plasmodium falciparum 3D7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T60 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T60 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DUA:2,5-DIDEOXY-5-(TRITYLAMINO)URIDINE'>DUA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.396&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3t64|3t64]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DUA:2,5-DIDEOXY-5-(TRITYLAMINO)URIDINE'>DUA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PF11_0282 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36329 PLAF7])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/dUTP_diphosphatase dUTP diphosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.23 3.6.1.23] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t60 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t60 OCA], [https://pdbe.org/3t60 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t60 RCSB], [https://www.ebi.ac.uk/pdbsum/3t60 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t60 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t60 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t60 OCA], [https://pdbe.org/3t60 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t60 RCSB], [https://www.ebi.ac.uk/pdbsum/3t60 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t60 ProSAT]</span></td></tr>
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/Q8II92_PLAF7 Q8II92_PLAF7]
-
Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) is a potential drug target for malaria. We previously reported some 5'-tritylated deoxyuridine analogues (both cyclic and acyclic) as selective inhibitors of the Plasmodium falciparum dUTPase. Modelling studies indicated that it might be possible to replace the trityl group with a diphenyl moiety, as two of the phenyl groups are buried, whereas the third is exposed to solvent. Herein we report the synthesis and evaluation of some diphenyl analogues that have lower lipophilicity and molecular weight than the trityl lead compound. Co-crystal structures show that the diphenyl inhibitors bind in a similar manner to the corresponding trityl derivatives, with the two phenyl moieties occupying the predicted buried phenyl binding sites. The diphenyl compounds prepared show similar or slightly lower inhibition of PfdUTPase, and similar or weaker inhibition of parasite growth than the trityl compounds.
+
-
 
+
-
Design, synthesis, and evaluation of 5'-diphenyl nucleoside analogues as inhibitors of the Plasmodium falciparum dUTPase.,Hampton SE, Baragana B, Schipani A, Bosch-Navarrete C, Musso-Buendia JA, Recio E, Kaiser M, Whittingham JL, Roberts SM, Shevtsov M, Brannigan JA, Kahnberg P, Brun R, Wilson KS, Gonzalez-Pacanowska D, Johansson NG, Gilbert IH ChemMedChem. 2011 Oct 4;6(10):1816-31. PMID:22049550<ref>PMID:22049550</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 3t60" style="background-color:#fffaf0;"></div>
+
==See Also==
==See Also==
*[[DUTPase 3D structures|DUTPase 3D structures]]
*[[DUTPase 3D structures|DUTPase 3D structures]]
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Plaf7]]
+
[[Category: Plasmodium falciparum 3D7]]
-
[[Category: DUTP diphosphatase]]
+
[[Category: Baragana B]]
-
[[Category: Baragana, B]]
+
[[Category: Bosch-Navarrete C]]
-
[[Category: Bosch-Navarrete, C]]
+
[[Category: Brannigan JA]]
-
[[Category: Brannigan, J A]]
+
[[Category: Brun R]]
-
[[Category: Brun, R]]
+
[[Category: Gilbert IH]]
-
[[Category: Gilbert, I H]]
+
[[Category: Gonzalez-Pacanowska D]]
-
[[Category: Gonzalez-Pacanowska, D]]
+
[[Category: Hampton SE]]
-
[[Category: Hampton, S E]]
+
[[Category: Johansson NG]]
-
[[Category: Johansson, N G]]
+
[[Category: Kahnberg P]]
-
[[Category: Kahnberg, P]]
+
[[Category: Kaiser M]]
-
[[Category: Kaiser, M]]
+
[[Category: Musso-Buendia A]]
-
[[Category: Musso-Buendia, A]]
+
[[Category: Recio E]]
-
[[Category: Recio, E]]
+
[[Category: Roberts SM]]
-
[[Category: Roberts, S M]]
+
[[Category: Schipani A]]
-
[[Category: Schipani, A]]
+
[[Category: Shevtsov M]]
-
[[Category: Shevtsov, M]]
+
[[Category: Whittingham JL]]
-
[[Category: Whittingham, J L]]
+
[[Category: Wilson KS]]
-
[[Category: Wilson, K S]]
+
-
[[Category: Dutp binding]]
+
-
[[Category: Hydrolase-hydrolase inhibitor complex]]
+
-
[[Category: Nucleus]]
+
-
[[Category: Trimeric dutpase]]
+

Current revision

5'-Diphenyl Nucleoside Inhibitors of Plasmodium falciparum dUTPase

PDB ID 3t60

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3t60"
Personal tools